Phage-bacteria network analysis and its implication for the understanding of coral disease

Viruses in a 14th-Century Coprolite

(2014) S. Appelt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome

(2014) Rachel Marine et al.   Microbiome

Climate Change Influences on Marine Infectious Diseases: Implications for Management and Society

(2013) Colleen A. Burge et al.   Annual Review of Marine Science

Diseases in coral aquaculture: causes, implications and preventions

(2013) Christopher Sheridan et al.   AQUACULTURE

A comparison of culture-dependent and culture-independent techniques used to characterize bacterial communities on healthy and white plague-diseased corals of the Montastraea annularis species complex

(2013) G. M. Cook et al.   CORAL REEFS

Coral Bleaching Independent of Photosynthetic Activity

(2013) Dimitri Tolleter et al.   CURRENT BIOLOGY

Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters

(2013) Daniel F.R. Cleary et al.   FEMS MICROBIOLOGY ECOLOGY

Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching

(2013) Rebecca L. Vega Thurber et al.   GLOBAL CHANGE BIOLOGY

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Potential role of viruses in white plague coral disease

(2013) Nitzan Soffer et al.   ISME Journal

Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia braziliensis Corals

(2013) Gizele D. Garcia et al.   MICROBIAL ECOLOGY

Ecological Inferences from a deep screening of the Complex Bacterial Consortia associated with the coral, Porites astreoides

(2013) Mauricio Rodriguez-Lanetty et al.   MOLECULAR ECOLOGY

Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome

(2013) Sheetal R. Modi et al.   NATURE

Disturbance Driven Colony Fragmentation as a Driver of a Coral Disease Outbreak

(2013) Marilyn E. Brandt et al.   PLoS One

Bacteriophage adhering to mucus provide a non-host-derived immunity

(2013) J. J. Barr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phage therapy of the white plague-like disease of Favia favus in the Red Sea

(2012) I. Atad et al.   CORAL REEFS

Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts

(2012) C. Lozupone et al.   GENOME RESEARCH

Unique nucleocytoplasmic dsDNA and +ssRNA viruses are associated with the dinoflagellate endosymbionts of corals

(2012) Adrienne M S Correa et al.   ISME Journal

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

(2012) Cesar O Flores et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Phage–bacteria infection networks

(2012) Joshua S. Weitz et al.   TRENDS IN MICROBIOLOGY

Metagenomics and future perspectives in virus discovery

(2012) John L Mokili et al.   Current Opinion in Virology

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

(2011) William A. Walters et al.   BIOINFORMATICS

Taxonomy, Epidemiology, and Clinical Relevance of the Genus Arcobacter

(2011) L. Collado et al.   CLINICAL MICROBIOLOGY REVIEWS

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

(2011) Koty H Sharp et al.   ISME Journal

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease

(2011) Anny Cárdenas et al.   ISME Journal

PhyloChip™ microarray comparison of sampling methods used for coral microbial ecology

(2011) Christina A. Kellogg et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Human Pathogen Shown to Cause Disease in the Threatened Eklhorn Coral Acropora palmata

(2011) Kathryn Patterson Sutherland et al.   PLoS One

Statistical structure of host-phage interactions

(2011) C. O. Flores et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Projecting Coral Reef Futures Under Global Warming and Ocean Acidification

(2011) J. M. Pandolfi et al.   SCIENCE

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic analysis of the coral holobiont during a natural bleaching event on the Great Barrier Reef

(2011) Raechel Littman et al.   Environmental Microbiology Reports

The Urgent Need for Robust Coral Disease Diagnostics

(2011) F. Joseph Pollock et al.   PLoS Pathogens

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Coral-Associated Bacterial Assemblages: Current Knowledge and the Potential for Climate-Driven Impacts

(2010) Morgan E. Mouchka et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Diversity and distribution of single-stranded DNA phages in the North Atlantic Ocean

(2010) Kimberly P Tucker et al.   ISME Journal

Responses of coral-associated bacterial communities to heat stress differ withSymbiodiniumtype on the same coral host

(2010) RAECHEL A. LITTMAN et al.   MOLECULAR ECOLOGY

Multiple displacement amplification compromises quantitative analysis of metagenomes

(2010) Suzan Yilmaz et al.   NATURE METHODS

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

(2010) S. Sun et al.   NUCLEIC ACIDS RESEARCH

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Disease incidence is related to bleaching extent in reef-building corals

(2009) Marilyn E. Brandt et al.   ECOLOGY

Kiloniella laminariae gen. nov., sp. nov., an alphaproteobacterium from the marine macroalga Laminaria saccharina

(2009) J. Wiese et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

The coral reef crisis: The critical importance of

(2009) J.E.N. Veron et al.   MARINE POLLUTION BULLETIN

Viruses manipulate the marine environment

(2009) Forest Rohwer et al.   NATURE

Laboratory procedures to generate viral metagenomes

(2009) Rebecca V Thurber et al.   Nature Protocols

The future of coral reefs: a microbial perspective

(2009) Tracy D. Ainsworth et al.   TRENDS IN ECOLOGY & EVOLUTION

Microbial disease and the coral holobiont

(2009) David G. Bourne et al.   TRENDS IN MICROBIOLOGY

Phage Therapy of Coral White Plague Disease: Properties of Phage BA3

(2008) Rotem Efrony et al.   CURRENT MICROBIOLOGY

Viral communities associated with healthy and bleaching corals

(2008) Kristen L. Marhaver et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community composition of black band disease on the coral host Siderastrea siderea from three regions of the wider Caribbean

(2008) R Sekar et al.   MARINE ECOLOGY PROGRESS SERIES

Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns

(2008) J. R. Zaneveld et al.   MICROBIOLOGY-SGM

Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa

(2008) R. L. Vega Thurber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA