Dissecting the pre-placodal transcriptome to reveal presumptive direct targets of Six1 and Eya1 in cranial placodes

Selection of cell fate in the organ of Corti involves the integration of Hes/Hey signaling at theAtoh1promoter

(2016) Yassan Abdolazimi et al.   DEVELOPMENT

Identification of novel direct targets of Drosophila Sine oculis and Eyes absent by integration of genome-wide data sets

(2016) Meng Jin et al.   DEVELOPMENTAL BIOLOGY

Cellular and molecular insights into Hox protein action

(2015) R. Rezsohazy et al.   DEVELOPMENT

The SIX1-EYA transcriptional complex as a therapeutic target in cancer

(2015) Melanie A Blevins et al.   EXPERT OPINION ON THERAPEUTIC TARGETS

Control of hair cell development by molecular pathways involving Atoh1, Hes1 and Hes5

(2015) Yi-Xun Su et al.   GENE

The DACH/EYA/SIX gene network and its role in tumor initiation and progression

(2015) Yu Liu et al.   INTERNATIONAL JOURNAL OF CANCER

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Establishing the pre-placodal region and breaking it into placodes with distinct identities

(2014) Jean-Pierre Saint-Jeannet et al.   DEVELOPMENTAL BIOLOGY

Sensational placodes: Neurogenesis in the otic and olfactory systems

(2014) Esther C. Maier et al.   DEVELOPMENTAL BIOLOGY

Microarray identification of novel genes downstream of Six1, a critical factor in cranial placode, somite, and kidney development

(2014) Bo Yan et al.   DEVELOPMENTAL DYNAMICS

Transcriptome analysis reveals novel players in the cranial neural crest gene regulatory network

(2014) M. Simoes-Costa et al.   GENOME RESEARCH

Regulation of Drosophila Eye Development by the Transcription Factor Sine oculis

(2014) Barbara Jusiak et al.   PLoS One

Validation of novel reference genes for RT-qPCR studies of gene expression in Xenopus tropicalis during embryonic and post-embryonic development

(2013) Sophie Dhorne-Pollet et al.   DEVELOPMENTAL DYNAMICS

Progression of Neurogenesis in the Inner Ear Requires Inhibition of Sox2 Transcription by Neurogenin1 and Neurod1

(2013) L. Evsen et al.   JOURNAL OF NEUROSCIENCE

Six1 Promotes Proliferation of Pancreatic Cancer Cells via Upregulation of Cyclin D1 Expression

(2013) Zhaoming Li et al.   PLoS One

Six1 Regulates MyoD Expression in Adult Muscle Progenitor Cells

(2013) Yubing Liu et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

The Eyes Absent proteins in development and disease

(2012) Emmanuel Tadjuidje et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

EYA1 and SIX1 drive the neuronal developmental program in cooperation with the SWI/SNF chromatin-remodeling complex and SOX2 in the mammalian inner ear

(2012) M. Ahmed et al.   DEVELOPMENT

RIPPLY3 is a retinoic acid-inducible repressor required for setting the borders of the pre-placodal ectoderm

(2012) A. Janesick et al.   DEVELOPMENT

Regulation of Six1 expression by evolutionarily conserved enhancers in tetrapods

(2012) Shigeru Sato et al.   DEVELOPMENTAL BIOLOGY

The peripheral sensory nervous system in the vertebrate head: A gene regulatory perspective

(2012) Timothy Grocott et al.   DEVELOPMENTAL BIOLOGY

Eya1-Six1 Interaction Is Sufficient to Induce Hair Cell Fate in the Cochlea by Activating Atoh1 Expression in Cooperation with Sox2

(2012) Mohi Ahmed et al.   DEVELOPMENTAL CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

(2012) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The EYA-SO/SIX complex in development and disease

(2012) Pin-Xian Xu   PEDIATRIC NEPHROLOGY

The Prosensory Function of Sox2 in the Chicken Inner Ear Relies on the Direct Regulation of Atoh1

(2012) Joana Neves et al.   PLoS One

Human ESC-Derived Neural Crest Model Reveals a Key Role for SOX2 in Sensory Neurogenesis

(2011) Flavio Cimadamore et al.   Cell Stem Cell

Balancing cell numbers during organogenesis: Six1a differentially affects neurons and sensory hair cells in the inner ear

(2011) Olivier Bricaud et al.   DEVELOPMENTAL BIOLOGY

Origin and segregation of cranial placodes in Xenopus laevis

(2011) Mareike Pieper et al.   DEVELOPMENTAL BIOLOGY

Sequentially acting Sox transcription factors in neural lineage development

(2011) M. Bergsland et al.   GENES & DEVELOPMENT

Brn3a and Islet1 Act Epistatically to Regulate the Gene Expression Program of Sensory Differentiation

(2011) I. M. Dykes et al.   JOURNAL OF NEUROSCIENCE

EBF factors drive expression of multiple classes of target genes governing neuronal development

(2011) Yangsook S Green et al.   Neural Development

Pax genes during neural development and their potential role in neuroregeneration

(2011) Jennifer A. Thompson et al.   PROGRESS IN NEUROBIOLOGY

ETS family protein ETV2 is required for initiation of the endothelial lineage but not the hematopoietic lineage in the Xenopus embryo

(2010) Matthew C. Salanga et al.   DEVELOPMENTAL DYNAMICS

Activation of Six1 target genes is required for sensory placode formation

(2009) Nicolas A.D. Christophorou et al.   DEVELOPMENTAL BIOLOGY

Comparative expression analysis of the neurogenins in Xenopus tropicalis and Xenopus laevis

(2009) Frank Nieber et al.   DEVELOPMENTAL DYNAMICS

Brn3a regulates the transition from neurogenesis to terminal differentiation and represses non-neural gene expression in the trigeminal ganglion

(2009) Jason Lanier et al.   DEVELOPMENTAL DYNAMICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The sine oculis homeobox (SIX) family of transcription factors as regulators of development and disease

(2008) J. P. Kumar   CELLULAR AND MOLECULAR LIFE SCIENCES

Eya1 and Six1 promote neurogenesis in the cranial placodes in a SoxB1-dependent fashion

(2008) Gerhard Schlosser et al.   DEVELOPMENTAL BIOLOGY

Fine-grained fate maps for the ophthalmic and maxillomandibular trigeminal placodes in the chick embryo

(2008) Hong Xu et al.   DEVELOPMENTAL BIOLOGY

Eya1 gene dosage critically affects the development of sensory epithelia in the mammalian inner ear

(2008) D. Zou et al.   HUMAN MOLECULAR GENETICS

Cloning and developmental expression of the soxB2 genes, sox14 and sox21, during Xenopus laevis embryogenesis

(2008) Doreen D. Cunningham et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY