KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans

Histone H3K4 methylation regulates hyphal growth, secondary metabolism and multiple stress responses inFusarium graminearum

(2015) Ye Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin

(2015) Kirsty Jamieson et al.   GENOME RESEARCH

An overproduction of astellolides induced by genetic disruption of chromatin-remodeling factors in Aspergillus oryzae

(2015) Yasutomo Shinohara et al.   JOURNAL OF ANTIBIOTICS

KdmA, a histone H3 demethylase with bipartite function, differentially regulates primary and secondary metabolism inAspergillus nidulans

(2015) Agnieszka Gacek-Matthews et al.   MOLECULAR MICROBIOLOGY

Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth

(2015) Evelina Y. Basenko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Catechol Formation: A Novel Pathway in the Metabolism of Sterigmatocystin and 11-Methoxysterigmatocystin

(2014) Erika Pfeiffer et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Motif-Independent Prediction of a Secondary Metabolism Gene Cluster Using Comparative Genomics: Application to Sequenced Genomes of Aspergillus and Ten Other Filamentous Fungal Species

(2014) Itaru Takeda et al.   DNA RESEARCH

The Set1/COMPASS Histone H3 Methyltransferase Helps Regulate Mitosis With the CDK1 and NIMA Mitotic Kinases in Aspergillus nidulans

(2014) Meera Govindaraghavan et al.   GENETICS

Histone H3K9 and H3K27 methylation regulates fungal alkaloid biosynthesis in a fungal endophyte-plant symbiosis

(2014) Tetsuya Chujo et al.   MOLECULAR MICROBIOLOGY

Hymenosetin, a 3-decalinoyltetramic acid antibiotic from cultures of the ash dieback pathogen, Hymenoscyphus pseudoalbidus

(2014) Sandra Halecker et al.   PHYTOCHEMISTRY

Epigenetic Control of Effector Gene Expression in the Plant Pathogenic Fungus Leptosphaeria maculans

(2014) Jessica L. Soyer et al.   PLoS Genetics

Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase

(2014) David R Lorenz et al.   eLife

Development and validation of a (semi-)quantitative UHPLC-MS/MS method for the determination of 191 mycotoxins and other fungal metabolites in almonds, hazelnuts, peanuts and pistachios

(2013) Elisabeth Varga et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

(2013) Diane O Inglis et al.   BMC MICROBIOLOGY

SUMO: A Multifaceted Modifier of Chromatin Structure and Function

(2013) Caelin Cubeñas-Potts et al.   DEVELOPMENTAL CELL

TheAspergillusGenome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

(2013) Gustavo C. Cerqueira et al.   NUCLEIC ACIDS RESEARCH

Regional control of histone H3 lysine 27 methylation in Neurospora

(2013) K. Jamieson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neurospora crassa, a Model System for Epigenetics Research

(2013) R. Aramayo et al.   Cold Spring Harbor Perspectives in Biology

The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters

(2013) Lanelle R. Connolly et al.   PLoS Genetics

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

Loss of CclA, required for histone 3 lysine 4 methylation, decreases growth but increases secondary metabolite production inAspergillus fumigatus

(2013) Jonathan M. Palmer et al.   PeerJ

Signaling the Induction of Sporulation Involves the Interaction of Two Secondary Metabolites in Aspergillus nidulans

(2012) Ana Belén Rodríguez-Urra et al.   ACS Chemical Biology

Breaking the Silence: Protein Stabilization Uncovers Silenced Biosynthetic Gene Clusters in the Fungus Aspergillus nidulans

(2012) Jennifer Gerke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The chromatin code of fungal secondary metabolite gene clusters

(2012) Agnieszka Gacek et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription

(2012) Bianca P Hennig et al.   EMBO REPORTS

Two Separate Gene Clusters Encode the Biosynthetic Pathway for the Meroterpenoids Austinol and Dehydroaustinol in Aspergillus nidulans

(2012) Hsien-Chun Lo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Histone Lysine Methylation Dynamics: Establishment, Regulation, and Biological Impact

(2012) Joshua C. Black et al.   MOLECULAR CELL

Overexpression of theAspergillus nidulanshistone 4 acetyltransferase EsaA increases activation of secondary metabolite production

(2012) Alexandra A. Soukup et al.   MOLECULAR MICROBIOLOGY

Regulation of fungal secondary metabolism

(2012) Axel A. Brakhage   NATURE REVIEWS MICROBIOLOGY

Regulation of chromatin by histone modifications

(2011) Andrew J Bannister et al.   CELL RESEARCH

KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription

(2011) Liangqi Xie et al.   EMBO JOURNAL

Heterochromatin influences the secondary metabolite profile in the plant pathogen Fusarium graminearum

(2011) Yazmid Reyes-Dominguez et al.   FUNGAL GENETICS AND BIOLOGY

Development of a liquid chromatography tandem mass spectrometry method for simultaneous determination of eight adulterants in slimming functional foods

(2011) Ying Shi et al.   JOURNAL OF CHROMATOGRAPHY A

OPERating ON Chromatin, a Colorful Language where Context Matters

(2011) Kathryn E. Gardner et al.   JOURNAL OF MOLECULAR BIOLOGY

Dereplication of Microbial Natural Products by LC-DAD-TOFMS

(2011) Kristian F. Nielsen et al.   JOURNAL OF NATURAL PRODUCTS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation

(2011) H.-W. Nutzmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone Lysine Demethylase JARID1a Activates CLOCK-BMAL1 and Influences the Circadian Clock

(2011) L. DiTacchio et al.   SCIENCE

Reversal of Histone Methylation: Biochemical and Molecular Mechanisms of Histone Demethylases

(2010) Nima Mosammaparast et al.   Annual Review of Biochemistry

Characterization of the Aspergillus nidulans Monodictyphenone Gene Cluster

(2010) Y.-M. Chiang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Crystal structure of the catalytic core ofSaccharomyces cerevesiaehistone demethylase Rph1: insights into the substrate specificity and catalytic mechanism

(2010) Yuanyuan Chang et al.   BIOCHEMICAL JOURNAL

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans

(2010) Yazmid Reyes-Dominguez et al.   MOLECULAR MICROBIOLOGY

The Budding Yeast Nucleus

(2010) A. Taddei et al.   Cold Spring Harbor Perspectives in Biology

Essential Functions of the Histone Demethylase Lid

(2010) Ling Li et al.   PLoS Genetics

Identification of non-histone substrates for JMJD2A–C histone demethylases

(2009) V.K. Chaithanya Ponnaluri et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

Structural Insight Into Histone Recognition by the ING PHD Fingers

(2009) Karen Champagne et al.   CURRENT DRUG TARGETS

Molecular genetic analysis of the orsellinic acid/F9775 genecluster of Aspergillus nidulans

(2009) James F. Sanchez et al.   Molecular BioSystems

ING4 Mediates Crosstalk between Histone H3 K4 Trimethylation and H3 Acetylation to Attenuate Cellular Transformation

(2009) Tiffany Hung et al.   MOLECULAR CELL

Chromatin-level regulation of biosynthetic gene clusters

(2009) Jin Woo Bok et al.   Nature Chemical Biology

Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans

(2009) V. Schroeckh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and Characterization of the Asperthecin Gene Cluster of Aspergillus nidulans

(2008) E. Szewczyk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structural elucidation ofin vitrometabolites of emodin by liquid chromatography-tandem mass spectrometry

(2008) Rui Song et al.   BIOMEDICAL CHROMATOGRAPHY

Molecular Genetic Mining of the Aspergillus Secondary Metabolome: Discovery of the Emericellamide Biosynthetic Pathway

(2008) Yi-Ming Chiang et al.   CHEMISTRY & BIOLOGY

Nucleosome Positioning and Histone H3 Acetylation Are Independent Processes in theAspergillus nidulans prnD-prnBBidirectional Promoter

(2008) Yazmid Reyes-Dominguez et al.   EUKARYOTIC CELL

Genetic regulation of aflatoxin biosynthesis: From gene to genome

(2008) D. Ryan Georgianna et al.   FUNGAL GENETICS AND BIOLOGY

Direct Interaction between DNA Methyltransferase DIM-2 and HP1 Is Required for DNA Methylation in Neurospora crassa

(2008) S. Honda et al.   MOLECULAR AND CELLULAR BIOLOGY

Epigenetics of β-globin gene regulation

(2008) Christine M. Kiefer et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

A Cytosine Methyltransferase Homologue Is Essential for Sexual Development in Aspergillus nidulans

(2008) Dong W. Lee et al.   PLoS One