The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters

The Histone Mark H3K36me3 Regulates Human DNA Mismatch Repair through Its Interaction with MutSα

(2013) Feng Li et al.   CELL

Genetic Manipulation of the Fusarium fujikuroi Fusarin Gene Cluster Yields Insight into the Complex Regulation and Fusarin Biosynthetic Pathway

(2013) Eva-Maria Niehaus et al.   CHEMISTRY & BIOLOGY

Regional control of histone H3 lysine 27 methylation in Neurospora

(2013) K. Jamieson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Secondary Metabolism and Development Is Mediated by LlmF Control of VeA Subcellular Localization in Aspergillus nidulans

(2013) Jonathan M. Palmer et al.   PLoS Genetics

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

Regulation of Polycomb group genes Psc and Su(z)2 in Drosophila melanogaster

(2012) Sung Yeon Park et al.   MECHANISMS OF DEVELOPMENT

Overexpression of theAspergillus nidulanshistone 4 acetyltransferase EsaA increases activation of secondary metabolite production

(2012) Alexandra A. Soukup et al.   MOLECULAR MICROBIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Identification and Characterization of a Novel Diterpene Gene Cluster in Aspergillus nidulans

(2012) Kirsi Bromann et al.   PLoS One

Defining the Predicted Protein Secretome of the Fungal Wheat Leaf Pathogen Mycosphaerella graminicola

(2012) Alexandre Morais do Amaral et al.   PLoS One

Cryptic Aspergillus nidulans Antimicrobials

(2011) Steve S. Giles et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Heterologous expression system in Aspergillus oryzae for fungal biosynthetic gene clusters of secondary metabolites

(2011) Kanae Sakai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

Phylogenomic and functional domain analysis of polyketide synthases in Fusarium

(2011) Daren W. Brown et al.   Fungal Biology

Revealing the genetic structure of a trait by sequencing a population under selection

(2011) L. Parts et al.   GENOME RESEARCH

Coordinated histone modifications are associated with gene expression variation within and between species

(2011) M. Ha et al.   GENOME RESEARCH

Heterochromatin Is Required for Normal Distribution of Neurospora crassa CenH3

(2011) K. M. Smith et al.   MOLECULAR AND CELLULAR BIOLOGY

Assessing the complex architecture of polygenic traits in diverged yeast populations

(2011) FRANCISCO A. CUBILLOS et al.   MOLECULAR ECOLOGY

The Polycomb complex PRC2 and its mark in life

(2011) Raphaël Margueron et al.   NATURE

Involvement of a Velvet Protein FgVeA in the Regulation of Asexual Development, Lipid and Secondary Metabolisms and Virulence in Fusarium graminearum

(2011) Jinhua Jiang et al.   PLoS One

Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation

(2011) H.-W. Nutzmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Phenome-Based Functional Analysis of Transcription Factors in the Cereal Head Blight Fungus, Fusarium graminearum

(2011) Hokyoung Son et al.   PLoS Pathogens

Secondary metabolism in fungi: does chromosomal location matter?

(2010) Jonathan M Palmer et al.   CURRENT OPINION IN MICROBIOLOGY

Origin of the polycomb repressive complex 2 and gene silencing by an E(z) homolog in the unicellular alga Chlamydomonas

(2010) Scott Shaver et al.   Epigenetics

Involvement of transposon-like elements in penicillin gene cluster regulation

(2010) Mona Shaaban et al.   FUNGAL GENETICS AND BIOLOGY

Telomere position effect is regulated by heterochromatin-associated proteins and NkuA in Aspergillus nidulans

(2010) J. M. Palmer et al.   MICROBIOLOGY-SGM

Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans

(2010) Yazmid Reyes-Dominguez et al.   MOLECULAR MICROBIOLOGY

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Reconstitution of a fungal meroterpenoid biosynthesis reveals the involvement of a novel family of terpene cyclases

(2010) Takayuki Itoh et al.   Nature Chemistry

EpiChIP: gene-by-gene quantification of epigenetic modification levels

(2010) Daniel Hebenstreit et al.   NUCLEIC ACIDS RESEARCH

LaeA Control of Velvet Family Regulatory Proteins for Light-Dependent Development and Fungal Cell-Type Specificity

(2010) Özlem Sarikaya Bayram et al.   PLoS Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Characterization of carotenoid biosynthetic genes in the ascomycete Gibberella zeae

(2009) Jian-Ming Jin et al.   FEMS MICROBIOLOGY LETTERS

Improved tryprostatin B production by heterologous gene expression in Aspergillus nidulans

(2009) Shubha Maiya et al.   FUNGAL GENETICS AND BIOLOGY

FvVE1Regulates Biosynthesis of the Mycotoxins Fumonisins and Fusarins in Fusarium verticillioides

(2009) Kyung Myung et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A Gene Cluster Containing Two Fungal Polyketide Synthases Encodes the Biosynthetic Pathway for a Polyketide, Asperfuranone, inAspergillus nidulans

(2009) Yi-Ming Chiang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Chromatin-level regulation of biosynthetic gene clusters

(2009) Jin Woo Bok et al.   Nature Chemical Biology

Differential chromatin marking of introns and expressed exons by H3K36me3

(2009) Paulina Kolasinska-Zwierz et al.   NATURE GENETICS

Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans

(2009) V. Schroeckh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

Histone modifications associated with both A and B chromosomes of maize

(2008) Weiwei Jin et al.   CHROMOSOME RESEARCH

H3K9 Methylation Regulates Growth and Development inAspergillus fumigatus

(2008) Jonathan M. Palmer et al.   EUKARYOTIC CELL

Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa

(2008) Z. A. Lewis et al.   GENOME RESEARCH

H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome

(2008) F. M. Pauler et al.   GENOME RESEARCH

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Genome-wide high throughput analysis of DNA methylation in eukaryotes

(2008) Kyle R. Pomraning et al.   METHODS

Direct Interaction between DNA Methyltransferase DIM-2 and HP1 Is Required for DNA Methylation in Neurospora crassa

(2008) S. Honda et al.   MOLECULAR AND CELLULAR BIOLOGY

Epigenetic remodeling of the fungal secondary metabolome

(2008) Russell B. Williams et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

A chemical epigenetics approach for engineering the in situbiosynthesis of a cryptic natural product from Aspergillus niger

(2008) Jon C. Henrikson et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

VelB/VeA/LaeA Complex Coordinates Light Signal with Fungal Development and Secondary Metabolism

(2008) O. Bayram et al.   SCIENCE

The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9

(2008) Kristina M Smith et al.   Epigenetics & Chromatin

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

(2008) Natalie D. Fedorova et al.   PLoS Genetics