Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle

(2015) Elizabeth Ortiz-Gutiérrez et al.   PLoS Computational Biology

Subtle Changes in Motif Positioning Cause Tissue-Specific Effects on Robustness of an Enhancer's Activity

(2014) Jelena Erceg et al.   PLoS Genetics

Drosophila blastoderm patterning

(2013) Johannes Jaeger et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Logical modelling of Drosophila signalling pathways

(2013) Abibatou Mbodj et al.   Molecular BioSystems

A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History

(2012) Guillaume Junion et al.   CELL

An integrative model links multiple inputs and signaling pathways to the onset of DNA synthesis in hepatocytes

(2012) Jérémy Huard et al.   FEBS Journal

Predictive computation of genomic logic processing functions in embryonic development

(2012) I. S. Peter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparing Signaling Networks between Normal and Transformed Hepatocytes Using Discrete Logical Models

(2011) J. Saez-Rodriguez et al.   CANCER RESEARCH

A gene regulatory network controlling the embryonic specification of endoderm

(2011) Isabelle S. Peter et al.   NATURE

Dynamics and Mechanical Stability of the Developing Dorsoventral Organizer of the Wing Imaginal Disc

(2011) Oriol Canela-Xandri et al.   PLoS Computational Biology

Logic-Based Models for the Analysis of Cell Signaling Networks

(2010) Melody K. Morris et al.   BIOCHEMISTRY

Dynamically consistent reduction of logical regulatory graphs

(2010) Aurélien Naldi et al.   THEORETICAL COMPUTER SCIENCE

Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement

(2010) Laurence Calzone et al.   PLoS Computational Biology

Logical analysis of the budding yeast cell cycle

(2009) D.J. Irons   JOURNAL OF THEORETICAL BIOLOGY

Logical modelling of cell cycle control in eukaryotes: a comparative study

(2009) Adrien Fauré et al.   Molecular BioSystems

Combinatorial binding predicts spatio-temporal cis-regulatory activity

(2009) Robert P. Zinzen et al.   NATURE

Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc

(2008) A. Gonzalez et al.   BIOINFORMATICS

Segmenting the fly embryo: logical analysis of the role of the Segment Polarity cross-regulatory module

(2008) Lucas Sanchez et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY