Logical modelling of Drosophila signalling pathways

Functions and Mechanisms of Fibroblast Growth Factor (FGF) Signalling in Drosophila melanogaster

(2013) Villö Muha et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks

(2012) Daniel C Kirouac et al.   BMC Systems Biology

An integrative model links multiple inputs and signaling pathways to the onset of DNA synthesis in hepatocytes

(2012) Jérémy Huard et al.   FEBS Journal

Wnt Signalling Pathway Parameters for Mammalian Cells

(2012) Chin Wee Tan et al.   PLoS One

Agonistic and Antagonistic Roles for TNIK and MINK in Non-Canonical and Canonical Wnt Signalling

(2012) Alexander Mikryukov et al.   PLoS One

Signaling Mechanisms Controlling Cell Fate and Embryonic Patterning

(2012) N. Perrimon et al.   Cold Spring Harbor Perspectives in Biology

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network

(2012) Anton Crombach et al.   PLoS Computational Biology

Extending pathways and processes using molecular interaction networks to analyse cancer genome data

(2011) Enrico Glaab et al.   BMC BIOINFORMATICS

Comparing Signaling Networks between Normal and Transformed Hepatocytes Using Discrete Logical Models

(2011) J. Saez-Rodriguez et al.   CANCER RESEARCH

Differential activities of the Drosophila JAK/STAT pathway ligands Upd, Upd2 and Upd3

(2011) Victoria M. Wright et al.   CELLULAR SIGNALLING

The Drosophila Toll Signaling Pathway

(2011) S. Valanne et al.   JOURNAL OF IMMUNOLOGY

Large-scale network models of IL-1 and IL-6 signalling and their hepatocellular specification

(2011) Anke Ryll et al.   Molecular BioSystems

Dynamics of Dpp Signaling and Proliferation Control

(2011) O. Wartlick et al.   SCIENCE

Logic-Based Models for the Analysis of Cell Signaling Networks

(2010) Melody K. Morris et al.   BIOCHEMISTRY

Analysis of Thisbe and Pyramus functional domains reveals evidence for cleavage of Drosophila FGFs

(2010) Sarah Tulin et al.   BMC DEVELOPMENTAL BIOLOGY

Transforming growth factor-β and the hallmarks of cancer

(2010) Maozhen Tian et al.   CELLULAR SIGNALLING

Mesoderm migration in Drosophila is a multi-step process requiring FGF signaling and integrin activity

(2010) A. McMahon et al.   DEVELOPMENT

Intracellular Toll-like Receptors

(2010) Amanda L. Blasius et al.   IMMUNITY

Dynamically consistent reduction of logical regulatory graphs

(2010) Aurélien Naldi et al.   THEORETICAL COMPUTER SCIENCE

A robust model to describe the differentiation of T-helper cells

(2010) Luis Mendoza et al.   THEORY IN BIOSCIENCES

Evaluating Smoothened as a G-protein-coupled receptor for Hedgehog signalling

(2010) Katie L. Ayers et al.   TRENDS IN CELL BIOLOGY

Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement

(2010) Laurence Calzone et al.   PLoS Computational Biology

Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling

(2010) Aurélien Naldi et al.   PLoS Computational Biology

Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance

(2009) Özgür Sahin et al.   BMC Systems Biology

Logical analysis of the budding yeast cell cycle

(2009) D.J. Irons   JOURNAL OF THEORETICAL BIOLOGY

Modular logical modelling of the budding yeast cell cycle

(2009) Adrien Fauré et al.   Molecular BioSystems

Pathway databases and tools for their exploitation: benefits, current limitations and challenges

(2009) Anna Bauer-Mehren et al.   Molecular Systems Biology

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

(2009) Manu et al.   PLoS Computational Biology

PDGF/VEGF signaling controls cell size in Drosophila

(2009) David Sims et al.   GENOME BIOLOGY

Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc

(2008) A. Gonzalez et al.   BIOINFORMATICS

Synchronous versus asynchronous modeling of gene regulatory networks

(2008) A. Garg et al.   BIOINFORMATICS

Drosophila EGFR signalling is modulated by differential compartmentalization of Rhomboid intramembrane proteases

(2008) Shaul Yogev et al.   EMBO JOURNAL

The role of kinases in the Hedgehog signalling pathway

(2008) Reid A Aikin et al.   EMBO REPORTS

Specificity of the inhibitory effects of Dad on TGF-β family type I receptors, Thickveins, Saxophone, and Baboon inDrosophila

(2008) Yuto Kamiya et al.   FEBS LETTERS

Segmenting the fly embryo: logical analysis of the role of the Segment Polarity cross-regulatory module

(2008) Lucas Sanchez et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Boolean network models of cellular regulation: prospects and limitations

(2008) S. Bornholdt   Journal of the Royal Society Interface