A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle

Iron- and Ferritin-Dependent Reactive Oxygen Species Distribution: Impact on Arabidopsis Root System Architecture

(2015) Guilhem Reyt et al.   Molecular Plant

Quantifying the underlying landscape and paths of cancer

(2014) C. Li et al.   Journal of the Royal Society Interface

Landscape and flux reveal a new global view and physical quantification of mammalian cell cycle

(2014) Chunhe Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytokinins Control Endocycle Onset by Promoting the Expression of an APC/C Activator in Arabidopsis Roots

(2013) Naoki Takahashi et al.   CURRENT BIOLOGY

Plant WEE1 kinase is cell cycle regulated and removed at mitosis via the 26S proteasome machinery

(2013) Gemma S. Cook et al.   JOURNAL OF EXPERIMENTAL BOTANY

Control of cell cycle transcription during G1 and S phases

(2013) Cosetta Bertoli et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Downregulation of multiple CDK inhibitorICK/KRPgenes upregulates the E2F pathway and increases cell proliferation, and organ and seed sizes in Arabidopsis

(2013) Yan Cheng et al.   PLANT JOURNAL

Boolean Network Model Predicts Knockout Mutant Phenotypes of Fission Yeast

(2013) Maria I. Davidich et al.   PLoS One

Cell Patterns Emerge from Coupled Chemical and Physical Fields with Cell Proliferation Dynamics: The Arabidopsis thaliana Root as a Study System

(2013) Rafael A. Barrio et al.   PLoS Computational Biology

A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network

(2012) Changki Hong et al.   BMC Systems Biology

A Bistable Circuit Involving SCARECROW-RETINOBLASTOMA Integrates Cues to Inform Asymmetric Stem Cell Division

(2012) Alfredo Cruz-Ramírez et al.   CELL

Cell cycle regulates cell type in the Arabidopsis sepal

(2012) A. H. K. Roeder et al.   DEVELOPMENT

Genetic Framework of Cyclin-Dependent Kinase Function in Arabidopsis

(2012) Moritz K. Nowack et al.   DEVELOPMENTAL CELL

ArabidopsisE2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes

(2012) Zoltán Magyar et al.   EMBO JOURNAL

The Anaphase-Promoting Complex/Cyclosome in Control of Plant Development

(2012) Jefri Heyman et al.   Molecular Plant

Boolean modeling in systems biology: an overview of methodology and applications

(2012) Rui-Sheng Wang et al.   PHYSICAL BIOLOGY

Control of the Plant Cell Cycle by Developmental and Environmental Cues

(2012) S. Komaki et al.   PLANT AND CELL PHYSIOLOGY

Hormonal regulation of root growth: integrating local activities into global behaviour

(2012) Susana Ubeda-Tomás et al.   TRENDS IN PLANT SCIENCE

The retinoblastoma family of proteins and their regulatory functions in the mammalian cell division cycle

(2012) Shauna A Henley et al.   Cell Division

A General G1/S-Phase Cell-Cycle Control Module in the Flowering Plant Arabidopsis thaliana

(2012) Xin'Ai Zhao et al.   PLoS Genetics

Cell-cycle control as a target for calcium, hormonal and developmental signals: the role of phosphorylation in the retinoblastoma-centred pathway

(2011) Dénes Dudits et al.   ANNALS OF BOTANY

A commentary on the G2/M transition of the plant cell cycle

(2011) Dennis Francis   ANNALS OF BOTANY

The interaction between MYB proteins and their target DNA binding sites

(2011) Michael B. Prouse et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Developmental regulation of CYCA2s contributes to tissue-specific proliferation inArabidopsis

(2011) Steffen Vanneste et al.   EMBO JOURNAL

Origin of bistability underlying mammalian cell cycle entry

(2011) G. Yao et al.   Molecular Systems Biology

Evolution of networks and sequences in eukaryotic cell cycle control

(2011) F. R. Cross et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Pause-and-Stop: The Effects of Osmotic Stress on Cell Proliferation during Early Leaf Development inArabidopsisand a Role for Ethylene Signaling in Cell Cycle Arrest

(2011) Aleksandra Skirycz et al.   PLANT CELL

Light-Dependent Regulation of DEL1 Is Determined by the Antagonistic Action of E2Fb and E2Fc

(2011) B. Berckmans et al.   PLANT PHYSIOLOGY

Mutations in MYB3R1 and MYB3R4 Cause Pleiotropic Developmental Defects and Preferential Down-Regulation of Multiple G2/M-Specific Genes in Arabidopsis

(2011) N. Haga et al.   PLANT PHYSIOLOGY

Cell cycle commitment in budding yeast emerges from the cooperation of multiple bistable switches

(2011) T. Zhang et al.   Open Biology

A Hybrid Model of Mammalian Cell Cycle Regulation

(2011) Rajat Singhania et al.   PLoS Computational Biology

BoolNet—an R package for generation, reconstruction and analysis of Boolean networks

(2010) Christoph Müssel et al.   BIOINFORMATICS

Odefy -- From discrete to continuous models

(2010) Jan Krumsiek et al.   BMC BIOINFORMATICS

Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche

(2010) Eugenio Azpeitia et al.   BMC Systems Biology

Selective proteolysis sets the tempo of the cell cycle

(2010) Katia Marrocco et al.   CURRENT OPINION IN PLANT BIOLOGY

A mathematical model for cell size control in fission yeast

(2010) Bo Li et al.   JOURNAL OF THEORETICAL BIOLOGY

The Arabidopsis thaliana flower organ specification gene regulatory network determines a robust differentiation process

(2010) Yara-Elena Sánchez-Corrales et al.   JOURNAL OF THEORETICAL BIOLOGY

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

(2010) Jelle Van Leene et al.   Molecular Systems Biology

ArabidopsisRETINOBLASTOMA-RELATED Is Required for Stem Cell Maintenance, Cell Differentiation, and Lateral Organ Production

(2010) Lorenzo Borghi et al.   PLANT CELL

Origin of Irreversibility of Cell Cycle Start in Budding Yeast

(2010) Gilles Charvin et al.   PLOS BIOLOGY

Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator

(2010) Volkan Sevim et al.   PLoS Computational Biology

Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling

(2009) Dominik M Wittmann et al.   BMC Systems Biology

An R2R3-type transcription factor gene AtMYB59 regulates root growth and cell cycle progression in Arabidopsis

(2009) Rui-Ling Mu et al.   CELL RESEARCH

Transcriptional control of the cell cycle

(2009) Barbara Berckmans et al.   CURRENT OPINION IN PLANT BIOLOGY

Quantitative and cell type-specific transcriptional regulation of A-type cyclin-dependent kinase in Arabidopsis thaliana

(2009) Sumiko Adachi et al.   DEVELOPMENTAL BIOLOGY

System-level feedbacks control cell cycle progression

(2009) Orsolya Kapuy et al.   FEBS LETTERS

Retinoblastoma protein: a central processing unit

(2009) M. Poznic   JOURNAL OF BIOSCIENCES

Logical analysis of the budding yeast cell cycle

(2009) D.J. Irons   JOURNAL OF THEORETICAL BIOLOGY

Modular logical modelling of the budding yeast cell cycle

(2009) Adrien Fauré et al.   Molecular BioSystems

Logical modelling of cell cycle control in eukaryotes: a comparative study

(2009) Adrien Fauré et al.   Molecular BioSystems

Irreversibility of mitotic exit is the consequence of systems-level feedback

(2009) Sandra López-Avilés et al.   NATURE

Control of Cell Proliferation, Organ Growth, and DNA Damage Response Operate Independently of Dephosphorylation of the Arabidopsis Cdk1 Homolog CDKA;1

(2009) N. Dissmeyer et al.   PLANT CELL

CDKB1;1 Forms a Functional Complex with CYCA2;3 to Suppress Endocycle Onset

(2009) V. Boudolf et al.   PLANT PHYSIOLOGY

APC/CCCS52Acomplexes control meristem maintenance in theArabidopsisroot

(2009) Marleen Vanstraelen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of division and differentiation of plant stem cells and their derivatives

(2009) Jeroen Nieuwland et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: a dynamic spatial model

(2008) Mariana Benítez et al.   BMC Systems Biology

Functions, regulation and cellular localization of plant cyclin-dependent kinase inhibitors

(2008) H. WANG et al.   JOURNAL OF MICROSCOPY

Global control of cell-cycle transcription by coupled CDK and network oscillators

(2008) David A. Orlando et al.   NATURE

Distinct Light-Initiated Gene Expression and Cell Cycle Programs in the Shoot Apex and Cotyledons of Arabidopsis

(2008) E. Lopez-Juez et al.   PLANT CELL

SKP2A, an F-box protein that regulates cell division, is degraded via the ubiquitin pathway

(2008) Silvia Jurado et al.   PLANT JOURNAL

Degradation of the cyclin-dependent kinase inhibitor KRP1 is regulated by two different ubiquitin E3 ligases

(2008) Hong Ren et al.   PLANT JOURNAL

Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast

(2008) Maria I. Davidich et al.   PLoS One

Atypical E2F activity restrains APC/CCCS52A2 function obligatory for endocycle onset

(2008) T. Lammens et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA