Gene expression profiling analysis reveals a crucial gene regulating metabolism in adventitious roots of neem (Azadirachta indica)

Triterpenoid profiling and functional characterization of the initial genes involved in isoprenoid biosynthesis in neem (Azadirachta indica)

(2015) Avinash Pandreka et al.   BMC PLANT BIOLOGY

The chemistry and bioactivity of Southern African flora II: flavonoids, quinones and minor compound classes

(2015) Smith B. Babiaka et al.   RSC Advances

The Spatial and Temporal Transcriptomic Landscapes of Ginseng, Panax ginseng C. A. Meyer

(2015) Kangyu Wang et al.   Scientific Reports

Comprehensive analyses of genomes, transcriptomes and metabolites of neem tree

(2015) Nagesh A. Kuravadi et al.   PeerJ

Combining metabolomics and transcriptomics to characterize tanshinone biosynthesis in Salvia miltiorrhiza

(2014) Wei Gao et al.   BMC GENOMICS

Azadirachtin biosynthesis induction in Azadirachta indica A. Juss cotyledonary calli with elicitor agents

(2014) Marcelo Rodrigues et al.   BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY

Structure and electronic properties of azadirachtin

(2014) Elton A. S. de Castro et al.   JOURNAL OF MOLECULAR MODELING

Comparative transcripts profiling of fruit mesocarp and endocarp relevant to secondary metabolism by suppression subtractive hybridization in Azadirachta indica (neem)

(2014) Lokesh K. Narnoliya et al.   MOLECULAR BIOLOGY REPORTS

Brassinosteroid Regulates Cell Elongation by Modulating Gibberellin Metabolism in Rice

(2014) Hongning Tong et al.   PLANT CELL

Enhanced secondary metabolite production and pathway gene expression by leaf explants-induced direct root morphotypes are regulated by combination of growth regulators and culture conditions in Centella asiatica (L.) urban

(2014) Jyoti Singh et al.   PLANT GROWTH REGULATION

Gibberellins inhibit adventitious rooting in hybrid aspen and Arabidopsis by affecting auxin transport

(2014) Mélanie Mauriat et al.   PLANT JOURNAL

The uniqueness and therapeutic value of natural products from West African medicinal plants, part II: terpenoids, geographical distribution and drug discovery

(2014) Fidele Ntie-Kang et al.   RSC Advances

OsPIN1a Gene Participates in Regulating Negative Phototropism of Rice Roots

(2014) Hua-wei XU et al.   Rice Science

Effect of Elicitors and Precursors on Azadirachtin Production in Hairy Root Culture of Azadirachta indica

(2013) Smita Srivastava et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Genomics: the state of the art in RNA-seq analysis

(2013) Ian Korf   NATURE METHODS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

Strategies to Overcome Oxygen Transfer Limitations During Hairy Root Cultivation of Azadiracta indica for Enhanced Azadirachtin Production

(2012) Smita Srivastava et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica

(2012) Neeraja M Krishnan et al.   BMC GENOMICS

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensivein silicoassessment of RNA-seq experiments

(2012) Nagarjun Vijay et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Statistical medium optimization for enhanced azadirachtin production in hairy root culture of Azadirachta indica

(2011) Smita Srivastava et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

RSOsPR10 Expression in Response to Environmental Stresses is Regulated Antagonistically by Jasmonate/Ethylene and Salicylic Acid Signaling Pathways in Rice Roots

(2011) Kaoru Takeuchi et al.   PLANT AND CELL PHYSIOLOGY

454 EST analysis detects genes putatively involved in ginsenoside biosynthesis in Panax ginseng

(2011) S. Chen et al.   PLANT CELL REPORTS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Biosynthesis of Plant Isoprenoids: Perspectives for Microbial Engineering

(2009) James Kirby et al.   Annual Review of Plant Biology

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice

(2008) S.-F. Lo et al.   PLANT CELL