Comprehensive analyses of genomes, transcriptomes and metabolites of neem tree

Comparative transcripts profiling of fruit mesocarp and endocarp relevant to secondary metabolism by suppression subtractive hybridization in Azadirachta indica (neem)

(2014) Lokesh K. Narnoliya et al.   MOLECULAR BIOLOGY REPORTS

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

(2014) G Albert Wu et al.   NATURE BIOTECHNOLOGY

Subtractive transcriptomes of fruit and leaf reveal differential representation of transcripts in Azadirachta indica

(2014) Raja Rajakani et al.   Tree Genetics & Genomes

Next generation sequencing technologies for next generation plant breeding

(2014) Soham Ray et al.   Frontiers in Plant Science

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

(2013) Ray Ming et al.   GENOME BIOLOGY

A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica

(2012) Neeraja M Krishnan et al.   BMC GENOMICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Meliaceous Limonoids: Chemistry and Biological Activities

(2011) Qin-Gang Tan et al.   CHEMICAL REVIEWS

Analytical Study of Azadirachtin and 3-Tigloylazadirachtol Residues in Foliage and Phloem of Hardwood Tree Species by Liquid Chromatography–Electrospray Mass Spectrometry

(2011) Susana Grimalt et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

(2011) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SyMAP v3.4: a turnkey synteny system with application to plant genomes

(2011) Carol Soderlund et al.   NUCLEIC ACIDS RESEARCH

Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood

(2010) M. Csuos   BIOINFORMATICS

Synthesis of Limonoid Natural Products

(2010) Brian Heasley   EUROPEAN JOURNAL OF ORGANIC CHEMISTRY

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

(2010) A. J. Alverson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid analysis of organic farming insecticides in soil and produce using ultra-performance liquid chromatography/tandem mass spectrometry

(2009) Dariusz Drożdżyński et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Statistical inferences for isoform expression in RNA-Seq

(2009) Hui Jiang et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

The Azadirachtin Story

(2008) Gemma E. Veitch et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

SeqMap: mapping massive amount of oligonucleotides to the genome

(2008) H. Jiang et al.   BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

annot8r: GO, EC and KEGG annotation of EST datasets

(2008) Ralf Schmid et al.   BMC BIOINFORMATICS

Isolation and characterization of microsatellite markers in Indian neem (Azadirachta indica var. indica A. Juss) and cross-amplification in Thai neem (A. indica var. siamensis Valenton)

(2008) Chanpen Boontong et al.   CONSERVATION GENETICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH