Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames
Authors
Keywords
-
Journal
Nature Communications
Volume 7, Issue -, Pages 10238
Publisher
Springer Nature
Online
2016-01-05
DOI
10.1038/ncomms10238
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The nature of self for T cells—a systems-level perspective
- (2015) Diana P Granados et al. CURRENT OPINION IN IMMUNOLOGY
- Codon Bias as a Means to Fine-Tune Gene Expression
- (2015) Tessa E.F. Quax et al. MOLECULAR CELL
- Genome-wide Mapping and Characterization of Notch-Regulated Long Noncoding RNAs in Acute Leukemia
- (2014) Thomas Trimarchi et al. CELL
- Quantitative Temporal Viromics: An Approach to Investigate Host-Pathogen Interaction
- (2014) Michael P. Weekes et al. CELL
- Proteasome isoforms exhibit only quantitative differences in cleavage and epitope generation
- (2014) Michele Mishto et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Space–time wiring specificity supports direction selectivity in the retina
- (2014) Jinseop S. Kim et al. NATURE
- Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens
- (2014) Matthew M. Gubin et al. NATURE
- Proteogenomic characterization of human colon and rectal cancer
- (2014) Bing Zhang et al. NATURE
- Mass-spectrometry-based draft of the human proteome
- (2014) Mathias Wilhelm et al. NATURE
- Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing
- (2014) Mahesh Yadav et al. NATURE
- Massively parallel functional annotation of 3′ untranslated regions
- (2014) Wenxue Zhao et al. NATURE BIOTECHNOLOGY
- Onco-proteogenomics: cancer proteomics joins forces with genomics
- (2014) Javier A Alfaro et al. NATURE METHODS
- Proteogenomics: concepts, applications and computational strategies
- (2014) Alexey I Nesvizhskii NATURE METHODS
- Antigen-specific activation and cytokine-facilitated expansion of naive, human CD8+ T cells
- (2014) Matthias Wölfl et al. Nature Protocols
- Emerging evidence for functional peptides encoded by short open reading frames
- (2014) Shea J. Andrews et al. NATURE REVIEWS GENETICS
- Cryptic MHC class I-binding peptides are revealed by aminoglycoside-induced stop codon read-through into the 3' UTR
- (2014) E. Goodenough et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The nature and extent of contributions by defective ribosome products to the HLA peptidome
- (2014) D. Bourdetsky et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides
- (2014) Diana Paola Granados et al. Nature Communications
- Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
- (2014) Nicholas T. Ingolia et al. Cell Reports
- Translation of Small Open Reading Frames within Unannotated RNA Transcripts in Saccharomyces cerevisiae
- (2014) Jenna E. Smith et al. Cell Reports
- Pathways of Antigen Processing
- (2013) Janice S. Blum et al. Annual Review of Immunology
- Rejection of Leukemic Cells Requires Antigen-Specific T Cells with High Functional Avidity
- (2013) Krystel Vincent et al. BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION
- Tumor Exome Analysis Reveals Neoantigen-Specific T-Cell Reactivity in an Ipilimumab-Responsive Melanoma
- (2013) Nienke van Rooij et al. JOURNAL OF CLINICAL ONCOLOGY
- The Human Leukocyte Antigen–presented Ligandome of B Lymphocytes
- (2013) Chopie Hassan et al. MOLECULAR & CELLULAR PROTEOMICS
- Reassessing target antigens for adoptive T-cell therapy
- (2013) Christian S Hinrichs et al. NATURE BIOTECHNOLOGY
- Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells
- (2013) Paul F Robbins et al. NATURE MEDICINE
- HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics
- (2013) Rui M M Branca et al. NATURE METHODS
- Alternative cleavage and polyadenylation: extent, regulation and function
- (2013) Ran Elkon et al. NATURE REVIEWS GENETICS
- Gene regulation by antisense transcription
- (2013) Vicent Pelechano et al. NATURE REVIEWS GENETICS
- Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class I pathway
- (2013) S. Apcher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Positional Bias of MHC Class I Restricted T-Cell Epitopes in Viral Antigens Is Likely due to a Bias in Conservation
- (2013) Yohan Kim et al. PLoS Computational Biology
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- MHC I-associated peptides preferentially derive from transcripts bearing miRNA response elements
- (2012) D. P. Granados et al. BLOOD
- The role of mRNA translation in direct MHC class I antigen presentation
- (2012) Sébastien Apcher et al. CURRENT OPINION IN IMMUNOLOGY
- Peptidases trimming MHC class I ligands
- (2012) Mirjana Weimershaus et al. CURRENT OPINION IN IMMUNOLOGY
- The cancer antigenome
- (2012) Bianca Heemskerk et al. EMBO JOURNAL
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Nuclear translation visualized by ribosome-bound nascent chain puromycylation
- (2012) Alexandre David et al. JOURNAL OF CELL BIOLOGY
- Addressing Statistical Biases in Nucleotide-Derived Protein Databases for Proteogenomic Search Strategies
- (2012) Paul Blakeley et al. JOURNAL OF PROTEOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Peptidomic discovery of short open reading frame–encoded peptides in human cells
- (2012) Sarah A Slavoff et al. Nature Chemical Biology
- Leucine-tRNA Initiates at CUG Start Codons for Protein Synthesis and Presentation by MHC Class I
- (2012) S. R. Starck et al. SCIENCE
- Origin and plasticity of MHC I-associated self peptides
- (2011) Danielle de Verteuil et al. AUTOIMMUNITY REVIEWS
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- Insights into MHC class I antigen processing gained from large-scale analysis of class I ligands
- (2011) Gabor Mester et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Non-conventional sources of peptides presented by MHC class I
- (2011) Shelley R. Starck et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- NetMHCcons: a consensus method for the major histocompatibility complex class I predictions
- (2011) Edita Karosiene et al. IMMUNOGENETICS
- The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation
- (2011) E. Caron et al. Molecular Systems Biology
- Major source of antigenic peptides for the MHC class I pathway is produced during the pioneer round of mRNA translation
- (2011) S. Apcher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DRiPs solidify: progress in understanding endogenous MHC class I antigen processing
- (2011) Jonathan W. Yewdell TRENDS IN IMMUNOLOGY
- A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
- (2010) Alexey I. Nesvizhskii Journal of Proteomics
- Deletion of Immunoproteasome Subunits Imprints on the Transcriptome and Has a Broad Impact on Peptides Presented by Major Histocompatibility Complex I molecules
- (2010) Danielle de Verteuil et al. MOLECULAR & CELLULAR PROTEOMICS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Compartmentalized MHC class I antigen processing enhances immunosurveillance by circumventing the law of mass action
- (2010) A. Lev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Initiation context modulates autoregulation of eukaryotic translation initiation factor 1 (eIF1)
- (2010) I. P. Ivanov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Improved results in proteomics by use of local and peptide-class specific false discovery rates
- (2009) Lau Sennels et al. BMC BIOINFORMATICS
- A Cryptic Vascular Endothelial Growth Factor T-Cell Epitope: Identification and Characterization by Mass Spectrometry and T-Cell Assays
- (2008) A. O. Weinzierl et al. CANCER RESEARCH
- The MHC class I peptide repertoire is molded by the transcriptome
- (2008) Marie-Hélène Fortier et al. JOURNAL OF EXPERIMENTAL MEDICINE
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started