Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames
出版年份 2016 全文链接
标题
Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames
作者
关键词
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出版物
Nature Communications
Volume 7, Issue -, Pages 10238
出版商
Springer Nature
发表日期
2016-01-05
DOI
10.1038/ncomms10238
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The nature of self for T cells—a systems-level perspective
- (2015) Diana P Granados et al. CURRENT OPINION IN IMMUNOLOGY
- Codon Bias as a Means to Fine-Tune Gene Expression
- (2015) Tessa E.F. Quax et al. MOLECULAR CELL
- Genome-wide Mapping and Characterization of Notch-Regulated Long Noncoding RNAs in Acute Leukemia
- (2014) Thomas Trimarchi et al. CELL
- Quantitative Temporal Viromics: An Approach to Investigate Host-Pathogen Interaction
- (2014) Michael P. Weekes et al. CELL
- Proteasome isoforms exhibit only quantitative differences in cleavage and epitope generation
- (2014) Michele Mishto et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Space–time wiring specificity supports direction selectivity in the retina
- (2014) Jinseop S. Kim et al. NATURE
- Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens
- (2014) Matthew M. Gubin et al. NATURE
- Proteogenomic characterization of human colon and rectal cancer
- (2014) Bing Zhang et al. NATURE
- Mass-spectrometry-based draft of the human proteome
- (2014) Mathias Wilhelm et al. NATURE
- Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing
- (2014) Mahesh Yadav et al. NATURE
- Massively parallel functional annotation of 3′ untranslated regions
- (2014) Wenxue Zhao et al. NATURE BIOTECHNOLOGY
- Onco-proteogenomics: cancer proteomics joins forces with genomics
- (2014) Javier A Alfaro et al. NATURE METHODS
- Proteogenomics: concepts, applications and computational strategies
- (2014) Alexey I Nesvizhskii NATURE METHODS
- Antigen-specific activation and cytokine-facilitated expansion of naive, human CD8+ T cells
- (2014) Matthias Wölfl et al. Nature Protocols
- Emerging evidence for functional peptides encoded by short open reading frames
- (2014) Shea J. Andrews et al. NATURE REVIEWS GENETICS
- Cryptic MHC class I-binding peptides are revealed by aminoglycoside-induced stop codon read-through into the 3' UTR
- (2014) E. Goodenough et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The nature and extent of contributions by defective ribosome products to the HLA peptidome
- (2014) D. Bourdetsky et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides
- (2014) Diana Paola Granados et al. Nature Communications
- Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
- (2014) Nicholas T. Ingolia et al. Cell Reports
- Translation of Small Open Reading Frames within Unannotated RNA Transcripts in Saccharomyces cerevisiae
- (2014) Jenna E. Smith et al. Cell Reports
- Pathways of Antigen Processing
- (2013) Janice S. Blum et al. Annual Review of Immunology
- Rejection of Leukemic Cells Requires Antigen-Specific T Cells with High Functional Avidity
- (2013) Krystel Vincent et al. BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION
- Tumor Exome Analysis Reveals Neoantigen-Specific T-Cell Reactivity in an Ipilimumab-Responsive Melanoma
- (2013) Nienke van Rooij et al. JOURNAL OF CLINICAL ONCOLOGY
- The Human Leukocyte Antigen–presented Ligandome of B Lymphocytes
- (2013) Chopie Hassan et al. MOLECULAR & CELLULAR PROTEOMICS
- Reassessing target antigens for adoptive T-cell therapy
- (2013) Christian S Hinrichs et al. NATURE BIOTECHNOLOGY
- Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells
- (2013) Paul F Robbins et al. NATURE MEDICINE
- HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics
- (2013) Rui M M Branca et al. NATURE METHODS
- Alternative cleavage and polyadenylation: extent, regulation and function
- (2013) Ran Elkon et al. NATURE REVIEWS GENETICS
- Gene regulation by antisense transcription
- (2013) Vicent Pelechano et al. NATURE REVIEWS GENETICS
- Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class I pathway
- (2013) S. Apcher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Positional Bias of MHC Class I Restricted T-Cell Epitopes in Viral Antigens Is Likely due to a Bias in Conservation
- (2013) Yohan Kim et al. PLoS Computational Biology
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- MHC I-associated peptides preferentially derive from transcripts bearing miRNA response elements
- (2012) D. P. Granados et al. BLOOD
- The role of mRNA translation in direct MHC class I antigen presentation
- (2012) Sébastien Apcher et al. CURRENT OPINION IN IMMUNOLOGY
- Peptidases trimming MHC class I ligands
- (2012) Mirjana Weimershaus et al. CURRENT OPINION IN IMMUNOLOGY
- The cancer antigenome
- (2012) Bianca Heemskerk et al. EMBO JOURNAL
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Nuclear translation visualized by ribosome-bound nascent chain puromycylation
- (2012) Alexandre David et al. JOURNAL OF CELL BIOLOGY
- Addressing Statistical Biases in Nucleotide-Derived Protein Databases for Proteogenomic Search Strategies
- (2012) Paul Blakeley et al. JOURNAL OF PROTEOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Peptidomic discovery of short open reading frame–encoded peptides in human cells
- (2012) Sarah A Slavoff et al. Nature Chemical Biology
- Leucine-tRNA Initiates at CUG Start Codons for Protein Synthesis and Presentation by MHC Class I
- (2012) S. R. Starck et al. SCIENCE
- Origin and plasticity of MHC I-associated self peptides
- (2011) Danielle de Verteuil et al. AUTOIMMUNITY REVIEWS
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- Insights into MHC class I antigen processing gained from large-scale analysis of class I ligands
- (2011) Gabor Mester et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Non-conventional sources of peptides presented by MHC class I
- (2011) Shelley R. Starck et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- NetMHCcons: a consensus method for the major histocompatibility complex class I predictions
- (2011) Edita Karosiene et al. IMMUNOGENETICS
- The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation
- (2011) E. Caron et al. Molecular Systems Biology
- Major source of antigenic peptides for the MHC class I pathway is produced during the pioneer round of mRNA translation
- (2011) S. Apcher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DRiPs solidify: progress in understanding endogenous MHC class I antigen processing
- (2011) Jonathan W. Yewdell TRENDS IN IMMUNOLOGY
- A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
- (2010) Alexey I. Nesvizhskii Journal of Proteomics
- Deletion of Immunoproteasome Subunits Imprints on the Transcriptome and Has a Broad Impact on Peptides Presented by Major Histocompatibility Complex I molecules
- (2010) Danielle de Verteuil et al. MOLECULAR & CELLULAR PROTEOMICS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Compartmentalized MHC class I antigen processing enhances immunosurveillance by circumventing the law of mass action
- (2010) A. Lev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Initiation context modulates autoregulation of eukaryotic translation initiation factor 1 (eIF1)
- (2010) I. P. Ivanov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Improved results in proteomics by use of local and peptide-class specific false discovery rates
- (2009) Lau Sennels et al. BMC BIOINFORMATICS
- A Cryptic Vascular Endothelial Growth Factor T-Cell Epitope: Identification and Characterization by Mass Spectrometry and T-Cell Assays
- (2008) A. O. Weinzierl et al. CANCER RESEARCH
- The MHC class I peptide repertoire is molded by the transcriptome
- (2008) Marie-Hélène Fortier et al. JOURNAL OF EXPERIMENTAL MEDICINE
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