Meet the neighbors: Mapping local protein interactomes by proximity-dependent labeling with BioID

Mediator Architecture and RNA Polymerase II Interaction

(2016) Clemens Plaschka et al.   JOURNAL OF MOLECULAR BIOLOGY

An improved smaller biotin ligase for BioID proximity labeling

(2016) Dae In Kim et al.   MOLECULAR BIOLOGY OF THE CELL

Identification of Interactions in the NMD Complex Using Proximity-Dependent Biotinylation (BioID)

(2016) Christoph Schweingruber et al.   PLoS One

Usp12 stabilizes the T-cell receptor complex at the cell surface during signaling

(2016) Akhee S. Jahan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Src1 is a Protein of the Inner Nuclear Membrane Interacting with the Dictyostelium Lamin NE81

(2016) Petros Batsios et al.   Cells

Lamins: Nuclear Intermediate Filament Proteins with Fundamental Functions in Nuclear Mechanics and Genome Regulation

(2015) Yosef Gruenbaum et al.   Annual Review of Biochemistry

Inhibition of the Mitochondrial Protease ClpP as a Therapeutic Strategy for Human Acute Myeloid Leukemia

(2015) Alicia Cole et al.   CANCER CELL

A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface

(2015) Gagan D. Gupta et al.   CELL

Hippo Pathway in Organ Size Control, Tissue Homeostasis, and Cancer

(2015) Fa-Xing Yu et al.   CELL

The Cerebral Cavernous Malformation Pathway Controls Cardiac Development via Regulation of Endocardial MEKK3 Signaling and KLF Expression

(2015) Zinan Zhou et al.   DEVELOPMENTAL CELL

TBC1D14 regulates autophagy via the TRAPP complex and ATG9 traffic

(2015) C. A. Lamb et al.   EMBO JOURNAL

CALML5 is a ZNF750- and TINCR-induced protein that binds stratifin to regulate epidermal differentiation

(2015) Bryan K. Sun et al.   GENES & DEVELOPMENT

The nuclear pore complex - structure and function at a glance

(2015) G. Kabachinski et al.   JOURNAL OF CELL SCIENCE

BioID identifies novel c-MYC interacting partners in cultured cells and xenograft tumors

(2015) Dharmendra Dingar et al.   Journal of Proteomics

Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes

(2015) Jean-Philippe Lambert et al.   Journal of Proteomics

Regulation of Latent Membrane Protein 1 Signaling through Interaction with Cytoskeletal Proteins

(2015) Kirsten Holthusen et al.   JOURNAL OF VIROLOGY

Analysis of HIV-1 Gag Protein Interactions via Biotin Ligase Tagging

(2015) Christopher Ritchie et al.   JOURNAL OF VIROLOGY

Protein Neighbors and Proximity Proteomics

(2015) Johanna S. Rees et al.   MOLECULAR & CELLULAR PROTEOMICS

BioID-based Identification of Skp Cullin F-box (SCF)β-TrCP1/2E3 Ligase Substrates

(2015) Etienne Coyaud et al.   MOLECULAR & CELLULAR PROTEOMICS

SINC, a type III secreted protein of Chlamydia psittaci, targets the inner nuclear membrane of infected cells and uninfected neighbors

(2015) Sergio A. Mojica et al.   MOLECULAR BIOLOGY OF THE CELL

Proteomic identification of novel cytoskeletal proteins associated with TbPLK, an essential regulator of cell morphogenesis in Trypanosoma brucei

(2015) Michael R. McAllaster et al.   MOLECULAR BIOLOGY OF THE CELL

Centrosome function and assembly in animal cells

(2015) Paul T. Conduit et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes

(2015) Søren Lykke-Andersen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A modular open platform for systematic functional studies under physiological conditions

(2015) Christopher B. Mulholland et al.   NUCLEIC ACIDS RESEARCH

Quantitative proteomics using SILAC: Principles, applications, and developments

(2015) Xiulan Chen et al.   PROTEOMICS

Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation

(2015) Valerie Le Sage et al.   Virology Journal

Novel Components of the Toxoplasma Inner Membrane Complex Revealed by BioID

(2015) Allan L. Chen et al.   mBio

PPP2R5C Couples Hepatic Glucose and Lipid Homeostasis

(2015) Yong-Sheng Cheng et al.   PLoS Genetics

Phosphorylation of a Myosin Motor by TgCDPK3 Facilitates Rapid Initiation of Motility during Toxoplasma gondii egress

(2015) Rajshekhar Y. Gaji et al.   PLoS Pathogens

Serine Phosphorylation of HIV-1 Vpu and Its Binding to Tetherin Regulates Interaction with Clathrin Adaptors

(2015) Tonya Kueck et al.   PLoS Pathogens

Progerin reduces LAP2α-telomere association in Hutchinson-Gilford progeria

(2015) Alexandre Chojnowski et al.   eLife

ULK3 regulates cytokinetic abscission by phosphorylating ESCRT-III proteins

(2015) Anna Caballe et al.   eLife

The prenyltransferase UBIAD1 is the target of geranylgeraniol in degradation of HMG CoA reductase

(2015) Marc M Schumacher et al.   eLife

Force Dependent Biotinylation of Myosin IIA by α-Catenin Tagged with a Promiscuous Biotin Ligase

(2015) Shuji Ueda et al.   PLoS One

Proteomic Analysis of Proteins Surrounding Occludin and Claudin-4 Reveals Their Proximity to Signaling and Trafficking Networks

(2015) Karin Fredriksson et al.   PLoS One

MacroH2A1 associates with nuclear lamina and maintains chromatin architecture in mouse liver cells

(2015) Yuhua Fu et al.   Scientific Reports

Chlamydia psittaci: update on an underestimated zoonotic agent

(2015) Michael R. Knittler et al.   Pathogens and Disease

Proximity Interactions among Centrosome Components Identify Regulators of Centriole Duplication

(2014) Elif Nur Firat-Karalar et al.   CURRENT BIOLOGY

New Insights into the DT40 B Cell Receptor Cluster Using a Proteomic Proximity Labeling Assay

(2014) Xue-Wen Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MarvelD3 couples tight junctions to the MEKK1–JNK pathway to regulate cell behavior and survival

(2014) Emily Steed et al.   JOURNAL OF CELL BIOLOGY

Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover

(2014) David J. Elzi et al.   JOURNAL OF PROTEOME RESEARCH

Incorporating DNA shearing in standard affinity purification allows simultaneous identification of both soluble and chromatin-bound interaction partners

(2014) Jean-Philippe Lambert et al.   Journal of Proteomics

Proteomic Mapping of the Human Mitochondrial Intermembrane Space in Live Cells via Ratiometric APEX Tagging

(2014) Victoria Hung et al.   MOLECULAR CELL

Probing nuclear pore complex architecture with proximity-dependent biotinylation

(2014) D. I. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The eukaryotic signal sequence, YGRL, targets the chlamydial inclusion

(2014) Emily J. Kabeiseman et al.   Frontiers in Cellular and Infection Microbiology

Marked by association: techniques for proximity-dependent labeling of proteins in eukaryotic cells

(2013) Kyle J. Roux   CELLULAR AND MOLECULAR LIFE SCIENCES

CEP120 and SPICE1 Cooperate with CPAP in Centriole Elongation

(2013) David Comartin et al.   CURRENT BIOLOGY

The N and C Termini of ZO-1 Are Surrounded by Distinct Proteins and Functional Protein Networks

(2013) Christina M. Van Itallie et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Biotin ligase tagging identifies proteins proximal to E-cadherin, including lipoma preferred partner, a regulator of epithelial cell–cell and cell–substrate adhesion

(2013) Christina M. Van Itallie et al.   JOURNAL OF CELL SCIENCE

SCFs in the new millennium

(2013) E K Lee et al.   ONCOGENE

Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging

(2013) H.-W. Rhee et al.   SCIENCE

Protein Interaction Network of the Mammalian Hippo Pathway Reveals Mechanisms of Kinase-Phosphatase Interactions

(2013) A. L. Couzens et al.   Science Signaling

Novel Bilobe Components in Trypanosoma brucei Identified Using Proximity-Dependent Biotinylation

(2012) Brooke Morriswood et al.   EUKARYOTIC CELL

A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

(2012) Kyle J. Roux et al.   JOURNAL OF CELL BIOLOGY

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

HIV Gag polyprotein: processing and early viral particle assembly

(2012) Neil M. Bell et al.   TRENDS IN MICROBIOLOGY

Molecular Pathogenesis of Ewing Sarcoma: New Therapeutic and Transcriptional Targets

(2011) Stephen L. Lessnick et al.   Annual Review of Pathology-Mechanisms of Disease

ClpXP, an ATP-powered unfolding and protein-degradation machine

(2011) Tania A. Baker et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Nuclear lamina at the crossroads of the cytoplasm and nucleus

(2011) Larry Gerace et al.   JOURNAL OF STRUCTURAL BIOLOGY

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Dictyostelium discoideum—a model for many reasons

(2009) Sarah J. Annesley et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Promiscuous protein biotinylation by Escherichia coli biotin protein ligase

(2004) Eunjoo Choi-Rhee et al.   PROTEIN SCIENCE