Linkage and Association Mapping for Two Major Traits Used in the Maritime Pine Breeding Program: Height Growth and Stem Straightness

Genomic selection in maritime pine

(2016) Fikret Isik et al.   PLANT SCIENCE

High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster)

(2015) C. Plomion et al.   Molecular Ecology Resources

Genetic architecture of growth traits inPopulusrevealed by integrated quantitative trait locus (QTL) analysis and association studies

(2015) Qingzhang Du et al.   NEW PHYTOLOGIST

Nucleotide polymorphisms in a pine ortholog of theArabidopsisdegrading enzyme cellulase KORRIGAN are associated with early growth performance inPinus pinaster

(2015) José Antonio Cabezas et al.   TREE PHYSIOLOGY

LPmerge: an R package for merging genetic maps by linear programming

(2014) Jeffrey B. Endelman et al.   BIOINFORMATICS

Genetic control of functional traits related to photosynthesis and water use efficiency in Pinus pinaster Ait. drought response: integration of genome annotation, allele association and QTL detection for candidate gene identification

(2014) Marina de Miguel et al.   BMC GENOMICS

Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine

(2014) Christophe Plomion et al.   BMC GENOMICS

Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation

(2014) J. L. Wegrzyn et al.   GENETICS

The genetics of water-use efficiency and its relation to growth in maritime pine

(2014) Elisa Marguerit et al.   JOURNAL OF EXPERIMENTAL BOTANY

Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations

(2014) Luke M Evans et al.   NATURE GENETICS

Defining the role of common variation in the genomic and biological architecture of adult human height

(2014) Andrew R Wood et al.   NATURE GENETICS

Association mapping for wood quality and growth traits in Eucalyptus globulus ssp. globulus Labill identifies nine stable marker-trait associations for seven traits

(2014) Saravanan Thavamanikumar et al.   Tree Genetics & Genomes

Comparison of Methods to Account for Relatedness in Genome-Wide Association Studies with Family-Based Data

(2014) Jakris Eu-ahsunthornwattana et al.   PLoS Genetics

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

(2013) Emilie Chancerel et al.   BMC BIOLOGY

The genomic architecture and association genetics of adaptive characters using a candidate SNP approach in boreal black spruce

(2013) Julien Prunier et al.   BMC GENOMICS

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Association genetics of oleoresin flow in loblolly pine: discovering genes and predicting phenotype for improved resistance to bark beetles and bioenergy potential

(2013) Jared W. Westbrook et al.   NEW PHYTOLOGIST

In situgenetic association for serotiny, a fire-related trait, in Mediterranean maritime pine (Pinus pinaster)

(2013) Katharina B. Budde et al.   NEW PHYTOLOGIST

De novoassembly of maritime pine transcriptome: implications for forest breeding and biotechnology

(2013) Javier Canales et al.   PLANT BIOTECHNOLOGY JOURNAL

Whole-exome targeted sequencing of the uncharacterized pine genome

(2013) Leandro G. Neves et al.   PLANT JOURNAL

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Demonstration of Genome-Wide Association Studies for Identifying Markers for Wood Property and Male Strobili Traits in Cryptomeria japonica

(2013) Kentaro Uchiyama et al.   PLoS One

Impacts of Population Structure and Analytical Models in Genome-Wide Association Studies of Complex Traits in Forest Trees: A Case Study in Eucalyptus globulus

(2013) Eduardo P. Cappa et al.   PLoS One

Dissection of complex traits in forest trees — opportunities for marker-assisted selection

(2013) Saravanan Thavamanikumar et al.   Tree Genetics & Genomes

Genetic structure and association mapping of adaptive and selective traits in the east Texas loblolly pine (Pinus taeda L.) breeding populations

(2013) Vikram E. Chhatre et al.   Tree Genetics & Genomes

Epigenetic regulation of adaptive responses of forest tree species to the environment

(2013) Katharina Bräutigam et al.   Ecology and Evolution

synbreed: a framework for the analysis of genomic prediction data using R

(2012) Valentin Wimmer et al.   BIOINFORMATICS

Association mapping in forest trees and fruit crops

(2012) M. A. Khan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Rapid variance components–based method for whole-genome association analysis

(2012) Gulnara R Svishcheva et al.   NATURE GENETICS

Towards decoding the conifer giga-genome

(2012) John Mackay et al.   PLANT MOLECULAR BIOLOGY

Genotype–phenotype mapping in a post-GWAS world

(2012) Sergey V. Nuzhdin et al.   TRENDS IN GENETICS

Genetic parameters of growth, straightness and wood chemistry traits in Pinus pinaster

(2011) Camille Lepoittevin et al.   ANNALS OF FOREST SCIENCE

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

(2011) Emilie Chancerel et al.   BMC GENOMICS

QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

(2011) Betty Pelgas et al.   BMC GENOMICS

Extended Linkage Disequilibrium in Noncoding Regions in a Conifer, Cryptomeria japonica

(2011) E. Moritsuka et al.   GENETICS

Association Genetics of Wood Physical Traits in the Conifer White Spruce and Relationships With Gene Expression

(2011) Jean Beaulieu et al.   GENETICS

Association genetics of carbon isotope discrimination, height and foliar nitrogen in a natural population of Pinus taeda L

(2011) W P Cumbie et al.   HEREDITY

The heterogeneous levels of linkage disequilibrium in white spruce genes and comparative analysis with other conifers

(2011) N Pavy et al.   HEREDITY

Forest tree genomics: growing resources and applications

(2011) David B. Neale et al.   NATURE REVIEWS GENETICS

Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome

(2011) Andrew J. Eckert et al.   NEW PHYTOLOGIST

Association mapping for growth, straightness and wood chemistry traits in the Pinus pinaster Aquitaine breeding population

(2011) Camille Lepoittevin et al.   Tree Genetics & Genomes

Allelic Variation in Cell Wall Candidate Genes Affecting Solid Wood Properties in Natural Populations and Land Races of Pinus radiata

(2010) S. K. Dillon et al.   GENETICS

Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis)

(2010) Jason A. Holliday et al.   NEW PHYTOLOGIST

Association genetics of complex traits in plants

(2010) Pär K. Ingvarsson et al.   NEW PHYTOLOGIST

Genomic-Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R

(2010) Paulino Pérez et al.   Plant Genome

Genomics of growth traits in forest trees

(2009) Dario Grattapaglia et al.   CURRENT OPINION IN PLANT BIOLOGY

Comparison of Mixed-Model Approaches for Association Mapping

(2008) B. Stich et al.   GENETICS

Evolution of genetic variation for selected traits in successive breeding populations of maritime pine

(2008) L Bouffier et al.   HEREDITY

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

"Contrasting Patterns of Selection at Pinus pinaster Ait. Drought Stress Candidate Genes as Revealed by Genetic Differentiation Analyses"

(2007) E. Eveno et al.   MOLECULAR BIOLOGY AND EVOLUTION