Diversity of transcripts and transcript processing forms in plastids of the dinoflagellate alga Karenia mikimotoi

Phylogenomic analysis of Emiliania huxleyi provides evidence for haptophyte–stramenopile association and a chimeric haptophyte nuclear genome

(2015) John J. Miller et al.   Marine Genomics

Arabidopsis Chloroplast Mini-Ribonuclease III Participates in rRNA Maturation and Intron Recycling

(2015) Amber M. Hotto et al.   PLANT CELL

Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage

(2015) Ansgar Gruber et al.   PLANT JOURNAL

Integration of plastids with their hosts: Lessons learned from dinoflagellates

(2015) Richard G. Dorrell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles

(2014) Blake T Hovde et al.   BMC GENOMICS

Massive Gene Transfer and Extensive RNA Editing of a Symbiotic Dinoflagellate Plastid Genome

(2014) Sutada Mungpakdee et al.   Genome Biology and Evolution

Genome-Wide Transcript Profiling Reveals the Coevolution of Plastid Gene Sequences and Transcript Processing Pathways in the Fucoxanthin Dinoflagellate Karlodinium veneficum

(2014) Elisabeth Richardson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Simultaneous mapping of transcript ends at single-nucleotide resolution and identification of widespread promoter-associated non-coding RNA governed by TATA elements

(2014) Daechan Park et al.   NUCLEIC ACIDS RESEARCH

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Evolution of Chloroplast Transcript Processing in Plasmodium and Its Chromerid Algal Relatives

(2014) Richard G. Dorrell et al.   PLoS Genetics

Endosymbiotic Gene Transfer in Tertiary Plastid-Containing Dinoflagellates

(2013) Fabien Burki et al.   EUKARYOTIC CELL

Split Photosystem Protein, Linear-Mapping Topology, and Growth of Structural Complexity in the Plastid Genome of Chromera velia

(2013) Jan Janouškovec et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

A Tertiary Plastid Gains RNA Editing in Its New Host

(2012) Christopher J. Jackson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Polyuridylylation and processing of transcripts from multiple gene minicircles in chloroplasts of the dinoflagellate Amphidinium carterae

(2012) Adrian C. Barbrook et al.   PLANT MOLECULAR BIOLOGY

Positive Regulation of psbA Gene Expression by cis-Encoded Antisense RNAs in Synechocystis sp. PCC 6803

(2012) I. Sakurai et al.   PLANT PHYSIOLOGY

Functional remodeling of RNA processing in replacement chloroplasts by pathways retained from their predecessors

(2012) R. G. Dorrell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlation between Nuclear Plastid DNA Abundance and Plastid Number Supports the Limited Transfer Window Hypothesis

(2011) David Roy Smith et al.   Genome Biology and Evolution

EVOLUTIONARY ANALYSES OF THE NUCLEAR-ENCODED PHOTOSYNTHETIC GENE psbO FROM TERTIARY PLASTID-CONTAINING ALGAE IN DINOPHYTA1

(2011) Akiko Yokoyama et al.   JOURNAL OF PHYCOLOGY

The Origin and Characterization of New Nuclear Genes Originating from a Cytoplasmic Organellar Genome

(2011) A. H. Lloyd et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of plastid psb T sense and antisense RNAs

(2011) Ouafa Zghidi-Abouzid et al.   NUCLEIC ACIDS RESEARCH

Chloroplast genomes of photosynthetic eukaryotes

(2011) Beverley R. Green   PLANT JOURNAL

Genome Evolution of a Tertiary Dinoflagellate Plastid

(2011) Tove M. Gabrielsen et al.   PLoS One

Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA

(2011) R. E. Sharwood et al.   RNA

Chloroplast RNA Metabolism

(2010) David B. Stern et al.   Annual Review of Plant Biology

A novel multifunctional oligonucleotide microarray for Toxoplasma gondii

(2010) Amit Bahl et al.   BMC GENOMICS

Overexpression of a natural chloroplast-encoded antisense RNA in tobacco destabilizes 5S rRNA and retards plant growth

(2010) Amber M Hotto et al.   BMC PLANT BIOLOGY

When you can’t trust the DNA: RNA editing changes transcript sequences

(2010) Volker Knoop   CELLULAR AND MOLECULAR LIFE SCIENCES

Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles

(2010) D. Baurain et al.   MOLECULAR BIOLOGY AND EVOLUTION

A long antisense RNA in plant chloroplasts

(2010) J. Georg et al.   NEW PHYTOLOGIST

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

(2010) J. Janouskovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton

(2010) M. L. Cuvelier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substitutional editing of Heterocapsa triquetra chloroplast transcripts and a folding model for its divergent chloroplast 16S rRNA

(2009) Yunkun Dang et al.   GENE

Long Transcripts from Dinoflagellate Chloroplast Minicircles Suggest “Rolling Circle” Transcription

(2009) Yunkun Dang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transcript Analysis of Dinoflagellate Plastid Gene Minicircles

(2007) R. Ellen R. Nisbet et al.   PROTIST