Systems biology and genome-wide approaches to unveil the molecular players involved in the pre-germinative metabolism: implications on seed technology traits

Redox proteomics for the assessment of redox-related posttranslational regulation in plants

(2016) Hans-Peter Mock et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

(2016) Risper Auma Magwa et al.   BMC GENETICS

Comparative transcriptome analysis of wheat embryo and endosperm responses to ABA and H2O2 stresses during seed germination

(2016) Yonglong Yu et al.   BMC GENOMICS

Analysis of the embryo proteome of sycamore (Acer pseudoplatanus L.) seeds reveals a distinct class of proteins regulating dormancy release

(2016) Tomasz Andrzej Pawłowski et al.   JOURNAL OF PLANT PHYSIOLOGY

Seed priming to alleviate salinity stress in germinating seeds

(2016) Ehab A. Ibrahim   JOURNAL OF PLANT PHYSIOLOGY

Differential proteomics reveals the hallmarks of seed development in common bean ( Phaseolus vulgaris L.)

(2016) J.R. Parreira et al.   Journal of Proteomics

Proteomic analysis of Magnolia sieboldii K. Koch seed germination

(2016) Xiu-jun Lu et al.   Journal of Proteomics

Two Faces of One Seed: Hormonal Regulation of Dormancy and Germination

(2016) Kai Shu et al.   Molecular Plant

Effects of Parental Temperature and Nitrate on Seed Performance are Reflected by Partly Overlapping Genetic and Metabolic Pathways

(2016) Hanzi He et al.   PLANT AND CELL PHYSIOLOGY

Identification of genes involved in rice seed priming in the early imbibition stage

(2016) J. Cheng et al.   PLANT BIOLOGY

Rapid identification of lettuce seed germination mutants by bulked segregant analysis and whole genome sequencing

(2016) Heqiang Huo et al.   PLANT JOURNAL

Comparative proteomic analysis of β-aminobutyric acid-mediated alleviation of salt stress in barley

(2016) Agnieszka Mostek et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

DELAY OF GERMINATION1(DOG1) regulates both seed dormancy and flowering time through microRNA pathways

(2016) Heqiang Huo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alanine aminotransferase controls seed dormancy in barley

(2016) Kazuhiro Sato et al.   Nature Communications

Physical Methods for Seed Invigoration: Advantages and Challenges in Seed Technology

(2016) Susana de Sousa Araújo et al.   Frontiers in Plant Science

Genome-Wide Association Study Identifies Loci for Salt Tolerance during Germination in Autotetraploid Alfalfa (Medicago sativa L.) Using Genotyping-by-Sequencing

(2016) Long-Xi Yu et al.   Frontiers in Plant Science

Different Modes of Hydrogen Peroxide Action During Seed Germination

(2016) Łukasz Wojtyla et al.   Frontiers in Plant Science

Seed birth to death: dual functions of reactive oxygen species in seed physiology

(2015) S. P. Jeevan Kumar et al.   ANNALS OF BOTANY

Pretreatment with low-dose gamma irradiation enhances tolerance to the stress of cadmium and lead in Arabidopsis thaliana seedlings

(2015) Wencai Qi et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Priming with a double-stranded DNA virus alters Brassica rapa seed architecture and facilitates a defense response

(2015) Melanie L. Kalischuk et al.   GENE

Genes related to high temperature tolerance during maize seed germination

(2015) S.M.F. Dutra et al.   GENETICS AND MOLECULAR RESEARCH

Cross-adaptation to cadmium stress inPlantago ovataby pre-exposure to low dose of gamma rays: Effects on metallothionein and metal content

(2015) Nirmalya Ghoshal et al.   INTERNATIONAL JOURNAL OF RADIATION BIOLOGY

Phenotypic and metabolic responses to drought and salinity of four contrasting lentil accessions

(2015) A. Muscolo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Seed vigour and crop establishment: extending performance beyond adaptation

(2015) W.E. Finch-Savage et al.   JOURNAL OF EXPERIMENTAL BOTANY

The importance of safeguarding genome integrity in germination and seed longevity

(2015) Wanda M. Waterworth et al.   JOURNAL OF EXPERIMENTAL BOTANY

Proteomic analysis of elicitation of downy mildew disease resistance in pearl millet by seed priming with β-aminobutyric acid and Pseudomonas fluorescens

(2015) Chandra Pal Anup et al.   Journal of Proteomics

Dormancy and germination: How does the crop seed decide?

(2015) K. Shu et al.   PLANT BIOLOGY

ZmABA2, an interacting protein of ZmMPK5, is involved in abscisic acid biosynthesis and functions

(2015) Fangfang Ma et al.   PLANT BIOTECHNOLOGY JOURNAL

Seed priming: state of the art and new perspectives

(2015) S. Paparella et al.   PLANT CELL REPORTS

Germination Potential of Dormant and Nondormant Arabidopsis Seeds Is Driven by Distinct Recruitment of Messenger RNAs to Polysomes

(2015) Isabelle Basbouss-Serhal et al.   PLANT PHYSIOLOGY

Global Analysis Reveals the Crucial Roles of DNA Methylation during Rice Seed Development

(2015) Mei-Qing Xing et al.   PLANT PHYSIOLOGY

Deciphering priming-induced improvement of rapeseed (Brassica napus L.) germination through an integrated transcriptomic and proteomic approach

(2015) Szymon Kubala et al.   PLANT SCIENCE

Genome-Wide Dissection of the MicroRNA Expression Profile in Rice Embryo during Early Stages of Seed Germination

(2015) Dongli He et al.   PLoS One

Drought and salinity alter endogenous hormonal profiles at the seed germination phase

(2015) Analía Llanes et al.   SEED SCIENCE RESEARCH

Transcriptome Analysis of Gelatin Seed Treatment as a Biostimulant of Cucumber Plant Growth

(2015) H. T. Wilson et al.   TheScientificWorldJOURNAL

Physiological and proteomic analyses on artificially aged Brassica napus seed

(2015) Xiaojian Yin et al.   Frontiers in Plant Science

Genome-wide association mapping unravels the genetic control of seed germination and vigor in Brassica napus

(2015) Sarah V. Hatzig et al.   Frontiers in Plant Science

Transcriptome Analysis of Gelatin Seed Treatment as a Biostimulant of Cucumber Plant Growth

(2015) H. T. Wilson et al.   Scientific World Journal

A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice

(2015) Tobias Kretzschmar et al.   Nature Plants

Transcriptional profiling in pearl millet (Pennisetum glaucum L.R. Br.) for identification of differentially expressed drought responsive genes

(2015) Minakshi Choudhary et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Identification of Loci Associated with Drought Resistance Traits in Heterozygous Autotetraploid Alfalfa (Medicago sativa L.) Using Genome-Wide Association Studies with Genotyping by Sequencing

(2015) Tiejun Zhang et al.   PLoS One

Nano-TiO2 Is Not Phytotoxic As Revealed by the Oilseed Rape Growth and Photosynthetic Apparatus Ultra-Structural Response

(2015) Jun Li et al.   PLoS One

Abiotic Stress Responses in Legumes: Strategies Used to Cope with Environmental Challenges

(2014) Susana S. Araújo et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Melatonin enhances plant growth and abiotic stress tolerance in soybean plants

(2014) Wei Wei et al.   JOURNAL OF EXPERIMENTAL BOTANY

Involvement of reactive oxygen species in endosperm cap weakening and embryo elongation growth during lettuce seed germination

(2014) Yu Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

The sucrose–trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P

(2014) Umesh Prasad Yadav et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative analysis of metabolic proteome variation in ascorbate-primed and unprimed wheat seeds during germination under salt stress

(2014) Azzedine Fercha et al.   Journal of Proteomics

Metallothionein deficiency impacts copper accumulation and redistribution in leaves and seeds of Arabidopsis

(2014) Matheus R. Benatti et al.   NEW PHYTOLOGIST

The Functions of the Endosperm During Seed Germination

(2014) D. Yan et al.   PLANT AND CELL PHYSIOLOGY

AtMyb7, a subgroup 4 R2R3 Myb, negatively regulates ABA-induced inhibition of seed germination by blocking the expression of the bZIP transcription factor ABI5

(2014) JUN HYEOK KIM et al.   PLANT CELL AND ENVIRONMENT

Reactive oxygen species, abscisic acid and ethylene interact to regulate sunflower seed germination

(2014) HAYAT EL-MAAROUF-BOUTEAU et al.   PLANT CELL AND ENVIRONMENT

OsRACK1 Is Involved in Abscisic Acid- and H2O2-Mediated Signaling to Regulate Seed Germination in Rice (Oryza sativa, L.)

(2014) Dongping Zhang et al.   PLoS One

Impact of TiO2 nanoparticles on Vicia narbonensis L.: potential toxicity effects

(2014) M. Ruffini Castiglione et al.   PROTOPLASMA

Seed Priming of Trifolium repens L. Improved Germination and Early Seedling Growth on Heavy Metal-Contaminated Soil

(2014) Laurence Galhaut et al.   WATER AIR AND SOIL POLLUTION

Arabidopsis AL PHD-PRC1 Complexes Promote Seed Germination through H3K4me3-to-H3K27me3 Chromatin State Switch in Repression of Seed Developmental Genes

(2014) Anne Marie Molitor et al.   PLoS Genetics

Synergistic Exposure of Rice Seeds to Different Doses ofγ-Ray and Salinity Stress Resulted in Increased Antioxidant Enzyme Activities and Gene-Specific Modulation of TC-NER Pathway

(2014) Anca Macovei et al.   Biomed Research International

Ethylene, a key factor in the regulation of seed dormancy

(2014) Françoise Corbineau et al.   Frontiers in Plant Science

Seed dormancy and germination—emerging mechanisms and new hypotheses

(2014) Hiroyuki Nonogaki   Frontiers in Plant Science

DNA profiling, telomere analysis and antioxidant properties as tools for monitoring ex situ seed longevity

(2013) M. Donà et al.   ANNALS OF BOTANY

Seed-Development Programs: A Systems Biology–Based Comparison Between Dicots and Monocots

(2013) Nese Sreenivasulu et al.   Annual Review of Plant Biology

The study of a barley epigenetic regulator, HvDME, in seed development and under drought

(2013) Aliki Kapazoglou et al.   BMC PLANT BIOLOGY

Plant hormones and seed germination

(2013) Mohammad Miransari et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Physiological, Biochemical, and Molecular Mechanisms of Heat Stress Tolerance in Plants

(2013) Mirza Hasanuzzaman et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Metabolomic analysis of the polyphenols in germinating mung beans (Vigna radiata) seeds and sprouts

(2013) Dongyan Tang et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Camelina seed transcriptome: a tool for meal and oil improvement and translational research

(2013) Huu T. Nguyen et al.   PLANT BIOTECHNOLOGY JOURNAL

Elucidating hormonal/ROS networks during seed germination: insights and perspectives

(2013) Pedro Diaz-Vivancos et al.   PLANT CELL REPORTS

Gibberellins and abscisic acid signal crosstalk: living and developing under unfavorable conditions

(2013) Dortje Golldack et al.   PLANT CELL REPORTS

Combining association mapping and transcriptomics identifyHD2Bhistone deacetylase as a genetic factor associated with seed dormancy inArabidopsis thaliana

(2013) Ryoichi Yano et al.   PLANT JOURNAL

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Identification of a hydrogen peroxide signalling pathway in the control of light-dependent germination in Arabidopsis

(2013) Patricia Lariguet et al.   PLANTA

Differential control of seed primary dormancy in Arabidopsis ecotypes by the transcription factor SPATULA

(2013) F. E. Vaistij et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic insights into seed germination in response to environmental factors

(2013) Longyan Tan et al.   PROTEOMICS

A real-time, non-invasive, micro-optrode technique for detecting seed viability by using oxygen influx

(2013) Xia Xin et al.   Scientific Reports

ABI4 Regulates Primary Seed Dormancy by Regulating the Biogenesis of Abscisic Acid and Gibberellins in Arabidopsis

(2013) Kai Shu et al.   PLoS Genetics

Role of protein and mRNA oxidation in seed dormancy and germination

(2013) Hayat El-Maarouf-Bouteau et al.   Frontiers in Plant Science

Heat and chilling induced disruption of redox homeostasis and its regulation by hydrogen peroxide in germinating rice seeds (Oryza sativa L., Cultivar Ratna)

(2013) Soumen Bhattacharjee   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Advances in seed conservation of wild plant species: a review of recent research

(2013) F. R. Hay et al.   Conservation Physiology

Regulation of soybean seed germination through ethylene production in response to reactive oxygen species

(2012) Yushi Ishibashi et al.   ANNALS OF BOTANY

Seed Germination and Vigor

(2012) Loïc Rajjou et al.   Annual Review of Plant Biology

Selenium (Se) Seed Priming Induced Growth and Biochemical Changes in Wheat Under Water Deficit Conditions

(2012) Fahim Nawaz et al.   BIOLOGICAL TRACE ELEMENT RESEARCH

VANTED v2: a framework for systems biology applications

(2012) Hendrik Rohn et al.   BMC Systems Biology

The Interaction and Integration of Auxin Signaling Components

(2012) K.-i. Hayashi   PLANT AND CELL PHYSIOLOGY

Seed Biology in the 21st Century: Perspectives and New Directions

(2012) E. Nambara et al.   PLANT AND CELL PHYSIOLOGY

Reactive Oxygen Species Are Involved in Gibberellin/Abscisic Acid Signaling in Barley Aleurone Cells

(2012) Y. Ishibashi et al.   PLANT PHYSIOLOGY

Understanding the molecular pathways associated with seed vigor

(2012) Lorenzo Ventura et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Inhibition of SnRK1 by metabolites: Tissue-dependent effects and cooperative inhibition by glucose 1-phosphate in combination with trehalose 6-phosphate

(2012) Cátia Nunes et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Priming against environmental challenges and proteomics in plants: Update and agricultural perspectives

(2012) Georgia Tanou et al.   Frontiers in Plant Science

Comparative response of maize and rice genotypes to heat stress: status of oxidative stress and antioxidants

(2011) Sanjeev Kumar et al.   ACTA PHYSIOLOGIAE PLANTARUM

Epigenetics of the epigenome

(2011) Jeffrey L Bennetzen et al.   CURRENT OPINION IN PLANT BIOLOGY

Ascorbic acid and reactive oxygen species are involved in the inhibition of seed germination by abscisic acid in rice seeds

(2011) N. Ye et al.   JOURNAL OF EXPERIMENTAL BOTANY

First off the mark: early seed germination

(2011) Karin Weitbrecht et al.   JOURNAL OF EXPERIMENTAL BOTANY

Toward Characterizing Seed Vigor in Alfalfa Through Proteomic Analysis of Germination and Priming

(2011) Rafika Yacoubi et al.   JOURNAL OF PROTEOME RESEARCH

A novel role for histone methyltransferase KYP/SUVH4 in the control of Arabidopsis primary seed dormancy

(2011) Jian Zheng et al.   NEW PHYTOLOGIST

Arabidopsis Seed Germination Under Abiotic Stress as a Concert of Action of Phytohormones

(2011) Agata Daszkowska-Golec   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

(2011) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Understanding the role of H2O2 during pea seed germination: a combined proteomic and hormone profiling approach

(2011) GREGORIO BARBA-ESPÍN et al.   PLANT CELL AND ENVIRONMENT

ABA signal transduction at the crossroad of biotic and abiotic stress responses

(2011) SUNG CHUL LEE et al.   PLANT CELL AND ENVIRONMENT

Role of HD2 genes in seed germination and early seedling growth in Arabidopsis

(2011) Adam Colville et al.   PLANT CELL REPORTS

Role of proline and glycinebetaine pretreatments in improving heat tolerance of sprouting sugarcane (Saccharum sp.) buds

(2011) Rizwan Rasheed et al.   PLANT GROWTH REGULATION

Cytokinin antagonizes ABA suppression to seed germination of Arabidopsis by downregulating ABI5 expression

(2011) Yanping Wang et al.   PLANT JOURNAL

New insights on the barrel medic MtOGG1 and MtFPG functions in relation to oxidative stress response in planta and during seed imbibition

(2011) Anca Macovei et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

(2011) G. W. Bassel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Redox-sensitive proteome and antioxidant strategies in wheat seed dormancy control

(2011) Natalia V. Bykova et al.   PROTEOMICS

Salicylic acid alleviates decreases in photosynthesis under heat stress and accelerates recovery in grapevine leaves

(2010) Lijun Wang et al.   BMC PLANT BIOLOGY

Metals and seeds: Biochemical and molecular implications and their significance for seed germination

(2010) Ilse Kranner et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

The TFIIS and TFIIS-like genes from Medicago truncatula are involved in oxidative stress response

(2010) Anca Macovei et al.   GENE

Seed imbibition in Medicago truncatula Gaertn.: Expression profiles of DNA repair genes in relation to PEG-mediated stress

(2010) Alma Balestrazzi et al.   JOURNAL OF PLANT PHYSIOLOGY

What is stress? Concepts, definitions and applications in seed science

(2010) Ilse Kranner et al.   NEW PHYTOLOGIST

MOTHER OF FT AND TFL1Regulates Seed Germination through a Negative Feedback Loop Modulating ABA Signaling inArabidopsis

(2010) Wanyan Xi et al.   PLANT CELL

Genotoxic stress and DNA repair in plants: emerging functions and tools for improving crop productivity

(2010) Alma Balestrazzi et al.   PLANT CELL REPORTS

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Noninvasive diagnosis of seed viability using infrared thermography

(2010) Ilse Kranner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plastochromanol-8 and tocopherols are essential lipid-soluble antioxidants during seed desiccation and quiescence inArabidopsis

(2010) Laurent Mène-Saffrané et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice

(2010) K. Sugimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Omics meet networks—using systems approaches to infer regulatory networks in plants

(2009) Miguel A Moreno-Risueno et al.   CURRENT OPINION IN PLANT BIOLOGY

Glucose-Induced Delay of Seed Germination in Rice is Mediated by the Suppression of ABA Catabolism Rather Than an Enhancement of ABA Biosynthesis

(2009) G. Zhu et al.   PLANT AND CELL PHYSIOLOGY

Variation in response to heavy metals during vegetative growth in Dorycnium pentaphyllum Scop.

(2009) Isabelle Lefèvre et al.   PLANT GROWTH REGULATION

The Mechanisms Involved in Seed Dormancy Alleviation by Hydrogen Cyanide Unravel the Role of Reactive Oxygen Species as Key Factors of Cellular Signaling during Germination

(2009) K. Oracz et al.   PLANT PHYSIOLOGY

The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis

(2009) T. J. Holman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems Approaches to Identifying Gene Regulatory Networks in Plants

(2008) Terri A. Long et al.   Annual Review of Cell and Developmental Biology

Molecular Aspects of Seed Dormancy

(2008) Ruth Finkelstein et al.   Annual Review of Plant Biology

Effects of Heavy Metal Toxicity on Growth, Symbiosis, Seed yield and Metal Uptake in Pea Grown in Metal Amended Soil

(2008) Parvaze Ahmad Wani et al.   BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY

Transcriptome- and proteome-wide analyses of seed germination

(2008) Julie Catusse et al.   COMPTES RENDUS BIOLOGIES

From intracellular signaling networks to cell death: the dual role of reactive oxygen species in seed physiology

(2008) Christophe Bailly et al.   COMPTES RENDUS BIOLOGIES

The qSD12 Locus Controls Offspring Tissue-Imposed Seed Dormancy in Rice

(2008) X.-Y. Gu et al.   GENETICS

Characterization of Quantitative Trait Loci Controlling Genetic Variation for Preharvest Sprouting in Synthetic Backcross-Derived Wheat Lines

(2008) M. Imtiaz et al.   GENETICS

Thioredoxin targets in plants: The first 30 years

(2008) Françoise Montrichard et al.   Journal of Proteomics

Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination

(2008) Michael J. Holdsworth et al.   NEW PHYTOLOGIST

Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling

(2008) Jérôme Verdier et al.   PLANT MOLECULAR BIOLOGY

Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process

(2008) K. A. Howell et al.   PLANT PHYSIOLOGY

Barley Grain Maturation and Germination: Metabolic Pathway and Regulatory Network Commonalities and Differences Highlighted by New MapMan/PageMan Profiling Tools

(2008) N. Sreenivasulu et al.   PLANT PHYSIOLOGY

Genetic and QTL analyses of seed dormancy and preharvest sprouting resistance in the wheat germplasm CN10955

(2008) F. C. Ogbonnaya et al.   THEORETICAL AND APPLIED GENETICS

Post-genomics dissection of seed dormancy and germination

(2007) Michael J. Holdsworth et al.   TRENDS IN PLANT SCIENCE