BindUP: a web server for non-homology-based prediction of DNA and RNA binding proteins
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
BindUP: a web server for non-homology-based prediction of DNA and RNA binding proteins
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 44, Issue W1, Pages W568-W574
Publisher
Oxford University Press (OUP)
Online
2016-05-20
DOI
10.1093/nar/gkw454
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation
- (2015) Ruifeng Xu et al. BMC Systems Biology
- A comprehensive comparative review of sequence-based predictors of DNA- and RNA-binding residues
- (2015) Jing Yan et al. BRIEFINGS IN BIOINFORMATICS
- Computational Prediction of RNA-Binding Proteins and Binding Sites
- (2015) Jingna Si et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Conserved mRNA-binding proteomes in eukaryotic organisms
- (2015) Ana M Matia-González et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- I-TASSER server: new development for protein structure and function predictions
- (2015) Jianyi Yang et al. NUCLEIC ACIDS RESEARCH
- Prediction of nucleic acid binding probability in proteins: a neighboring residue network based score
- (2015) Z. Miao et al. NUCLEIC ACIDS RESEARCH
- The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
- (2015) Benedikt M. Beckmann et al. Nature Communications
- Conserved mRNA-binding proteomes in eukaryotic organisms
- (2015) Ana M Matia-González et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs
- (2015) Zhichao Miao et al. PLoS Computational Biology
- Dynamics of WD-repeat containing proteins in SSU processome components
- (2014) Kouko Wada et al. Biochemistry and Cell Biology
- Discovery of protein–RNA networks
- (2014) Davide Cirillo et al. Molecular BioSystems
- Chromatin enrichment for proteomics
- (2014) Georg Kustatscher et al. Nature Protocols
- A census of human RNA-binding proteins
- (2014) Stefanie Gerstberger et al. NATURE REVIEWS GENETICS
- The structure, function and evolution of proteins that bind DNA and RNA
- (2014) William H. Hudson et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- System-wide identification of RNA-binding proteins by interactome capture
- (2013) Alfredo Castello et al. Nature Protocols
- The RNA-binding protein repertoire of embryonic stem cells
- (2013) S Chul Kwon et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Crystal structure of the protein fromArabidopsis thalianagene At5g06450, a putative DnaQ-like exonuclease domain-containing protein with homohexameric assembly
- (2013) David W. Smith et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome
- (2013) Huiying Zhao et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
- (2012) Alfredo Castello et al. CELL
- The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts
- (2012) Alexander G. Baltz et al. MOLECULAR CELL
- Global analysis of yeast mRNPs
- (2012) Sarah F Mitchell et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- From face to interface recognition: a differential geometric approach to distinguish DNA from RNA binding surfaces
- (2011) Shula Shazman et al. NUCLEIC ACIDS RESEARCH
- Predicting nucleic acid binding interfaces from structural models of proteins
- (2011) Iris Dror et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction
- (2011) Shandar Ahmad et al. BMC STRUCTURAL BIOLOGY
- Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function
- (2010) H. Zhao et al. BIOINFORMATICS
- SVM based prediction of RNA-binding proteins using binding residues and evolutionary information
- (2010) Manish Kumar et al. JOURNAL OF MOLECULAR RECOGNITION
- Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets
- (2010) H. Zhao et al. NUCLEIC ACIDS RESEARCH
- Identification of DNA-binding Proteins Using Structural, Electrostatic and Evolutionary Features
- (2009) Guy Nimrod et al. JOURNAL OF MOLECULAR BIOLOGY
- Predicting DNA- and RNA-binding proteins from sequences with kernel methods
- (2009) Xiaojian Shao et al. JOURNAL OF THEORETICAL BIOLOGY
- Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
- (2009) Debashish Ray et al. NATURE BIOTECHNOLOGY
- A census of human transcription factors: function, expression and evolution
- (2009) Juan M. Vaquerizas et al. NATURE REVIEWS GENETICS
- A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human Genome
- (2009) Mu Gao et al. PLoS Computational Biology
- DBD-Hunter: a knowledge-based method for the prediction of DNA–protein interactions
- (2008) Mu Gao et al. NUCLEIC ACIDS RESEARCH
- The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies
- (2008) A. L. Cuff et al. NUCLEIC ACIDS RESEARCH
- Classifying RNA-Binding Proteins Based on Electrostatic Properties
- (2008) Shula Shazman et al. PLoS Computational Biology
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation