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Title
Discovery of protein–RNA networks
Authors
Keywords
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Journal
Molecular BioSystems
Volume 10, Issue 7, Pages 1632-1642
Publisher
Royal Society of Chemistry (RSC)
Online
2014-03-29
DOI
10.1039/c4mb00099d
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Note: Only part of the references are listed.- The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities
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- (2013) Liliana Malinovska et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
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- Altered Ribostasis: RNA-Protein Granules in Degenerative Disorders
- (2013) Mani Ramaswami et al. CELL
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- (2013) Ina Huppertz et al. METHODS
- Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein
- (2013) Andreas Zanzoni et al. NUCLEIC ACIDS RESEARCH
- HMDD v2.0: a database for experimentally supported human microRNA and disease associations
- (2013) Yang Li et al. NUCLEIC ACIDS RESEARCH
- The RNA-Protein World
- (2013) S. Altman RNA
- Ligand-induced stabilization of the aptamer terminal helix in the add adenine riboswitch
- (2013) F. Di Palma et al. RNA
- Discovering RNA-Protein Interactome by Using Chemical Context Profiling of the RNA-Protein Interface
- (2013) Marc Parisien et al. Cell Reports
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- (2013) Prajwal Ciryam et al. Cell Reports
- The RNA-Binding Protein Musashi1 Affects Medulloblastoma Growth via a Network of Cancer-Related Genes and Is an Indicator of Poor Prognosis
- (2012) Dat T. Vo et al. AMERICAN JOURNAL OF PATHOLOGY
- Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
- (2012) Alfredo Castello et al. CELL
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Robustness analysis of cellular systems using the genetic tug-of-war method
- (2012) Hisao Moriya et al. Molecular BioSystems
- De novo prediction of RNA–protein interactions from sequence information
- (2012) Ying Wang et al. Molecular BioSystems
- The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts
- (2012) Alexander G. Baltz et al. MOLECULAR CELL
- Regulated protein aggregation: stress granules and neurodegeneration
- (2012) Benjamin Wolozin Molecular Neurodegeneration
- Modular regulatory principles of large non-coding RNAs
- (2012) Mitchell Guttman et al. NATURE
- Protein–RNA interactions: new genomic technologies and perspectives
- (2012) Julian König et al. NATURE REVIEWS GENETICS
- X-inactivation: quantitative predictions of protein interactions in the Xist network
- (2012) Federico Agostini et al. NUCLEIC ACIDS RESEARCH
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- (2012) Geng Chen et al. NUCLEIC ACIDS RESEARCH
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- (2012) Isabel Iglesias-Platas et al. PLoS One
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- RNA–protein interactions in vivo: global gets specific
- (2012) Minna-Liisa Änkö et al. TRENDS IN BIOCHEMICAL SCIENCES
- Prediction of dinucleotide-specific RNA-binding sites in proteins
- (2011) Michael Fernandez et al. BMC BIOINFORMATICS
- Predicting RNA-Protein Interactions Using Only Sequence Information
- (2011) Usha K Muppirala et al. BMC BIOINFORMATICS
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- (2011) Heidi Olzscha et al. CELL
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- (2011) Tetsuro Murakami et al. HUMAN MOLECULAR GENETICS
- Sequence-Based Prediction of Protein Solubility
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- Computational methods for prediction of protein–RNA interactions
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- Metastability of Native Proteins and the Phenomenon of Amyloid Formation
- (2011) Andrew J. Baldwin et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions
- (2011) Ci Chu et al. MOLECULAR CELL
- Predicting protein associations with long noncoding RNAs
- (2011) Matteo Bellucci et al. NATURE METHODS
- A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
- (2011) Shivendra Kishore et al. NATURE METHODS
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- (2011) Yue Wan et al. NATURE REVIEWS GENETICS
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- (2011) Jessica I Hoell et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
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- (2011) Vera Pancaldi et al. NUCLEIC ACIDS RESEARCH
- NONCODE v3.0: integrative annotation of long noncoding RNAs
- (2011) D. Bu et al. NUCLEIC ACIDS RESEARCH
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- (2011) M. D. Simon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2011) J. B. Lucks et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2011) Ahmad M. Khalil et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
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- (2010) Markus Hafner et al. CELL
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- (2010) Chantal Sellier et al. EMBO JOURNAL
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- (2010) Youhna M Ayala et al. EMBO JOURNAL
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- (2010) Paulo P. Amaral et al. NUCLEIC ACIDS RESEARCH
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- (2010) B. A. Lewis et al. NUCLEIC ACIDS RESEARCH
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- (2010) D. Croft et al. NUCLEIC ACIDS RESEARCH
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- The Vienna RNA Websuite
- (2008) A. R. Gruber et al. NUCLEIC ACIDS RESEARCH
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- (2008) Marcel E. Dinger et al. NUCLEIC ACIDS RESEARCH
- PID: the Pathway Interaction Database
- (2008) Carl F. Schaefer et al. NUCLEIC ACIDS RESEARCH
- McKusick's Online Mendelian Inheritance in Man (OMIM(R))
- (2008) J. Amberger et al. NUCLEIC ACIDS RESEARCH
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