Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

nDNA-prot: identification of DNA-binding proteins based on unbalanced classification

(2014) Li Song et al.   BMC BIOINFORMATICS

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

Sequence Based Prediction of DNA-Binding Proteins Based on Hybrid Feature Selection Using Random Forest and Gaussian Naïve Bayes

(2014) Wangchao Lou et al.   PLoS One

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition

(2013) Peng-Mian Feng et al.   ANALYTICAL BIOCHEMISTRY

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis

(2013) Chuanxin Zou et al.   BMC BIOINFORMATICS

Survey of MapReduce frame operation in bioinformatics

(2013) Q. Zou et al.   BRIEFINGS IN BIOINFORMATICS

Sequence-specific inhibition of Dicer measured with a force-based microarray for RNA ligands

(2013) Katja Limmer et al.   NUCLEIC ACIDS RESEARCH

Hierarchical Classification of Protein Folds Using a Novel Ensemble Classifier

(2013) Chen Lin et al.   PLoS One

DNA-Prot: Identification of DNA Binding Proteins from Protein Sequence Information using Random Forest

(2012) K. Krishna. Kumar et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

(2012) Bin Liu et al.   PLoS One

iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties

(2012) Wei Chen et al.   PLoS One

Prediction of Lysine Ubiquitylation with Ensemble Classifier and Feature Selection

(2011) Xiaowei Zhao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

An Improved Profile-Level Domain Linker Propensity Index for Protein Domain Boundary Prediction.

(2011) Yanfeng Zhang et al.   PROTEIN AND PEPTIDE LETTERS

Predicting protein–protein interactions from protein sequences using meta predictor

(2010) Jun-Feng Xia et al.   AMINO ACIDS

iDBPs: a web server for the identification of DNA binding proteins

(2010) Guy Nimrod et al.   BIOINFORMATICS

An accurate feature-based method for identifying DNA-binding residues on protein surfaces

(2010) Yi Xiong et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of mitochondrial proteins of malaria parasite using split amino acid composition and PSSM profile

(2009) Ruchi Verma et al.   AMINO ACIDS

A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation

(2009) Qiwen Dong et al.   BIOINFORMATICS

Prediction of protein binding sites in protein structures using hidden Markov support vector machine

(2009) Bin Liu et al.   BMC BIOINFORMATICS

Exploiting three kinds of interface propensities to identify protein binding sites

(2009) Bin Liu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Predicting DNA- and RNA-binding proteins from sequences with kernel methods

(2009) Xiaojian Shao et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of interactiveness of proteins and nucleic acids based on feature selections

(2009) YouLang Yuan et al.   MOLECULAR DIVERSITY

The role of DNA shape in protein–DNA recognition

(2009) Remo Rohs et al.   NATURE

Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks

(2009) Munazah Andrabi et al.   BMC STRUCTURAL BIOLOGY

A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human Genome

(2009) Mu Gao et al.   PLoS Computational Biology

Combing ontologies and dipeptide composition for predicting DNA-binding proteins

(2008) Loris Nanni et al.   AMINO ACIDS

HSEpred: predict half-sphere exposure from protein sequences

(2008) Jiangning Song et al.   BIOINFORMATICS

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

(2008) Bin Liu et al.   BMC BIOINFORMATICS

The complete genome of an individual by massively parallel DNA sequencing

(2008) David A. Wheeler et al.   NATURE

DBD-Hunter: a knowledge-based method for the prediction of DNA–protein interactions

(2008) Mu Gao et al.   NUCLEIC ACIDS RESEARCH

Single-Molecule DNA Sequencing of a Viral Genome

(2008) T. D. Harris et al.   SCIENCE