From face to interface recognition: a differential geometric approach to distinguish DNA from RNA binding surfaces

Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression

(2011) S. Kishore et al.   Briefings in Functional Genomics

Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction

(2011) Shandar Ahmad et al.   BMC STRUCTURAL BIOLOGY

The Discovery of Zinc Fingers and Their Applications in Gene Regulation and Genome Manipulation

(2010) Aaron Klug   Annual Review of Biochemistry

iAlign: a method for the structural comparison of protein–protein interfaces

(2010) Mu Gao et al.   BIOINFORMATICS

Prediction of protein–RNA binding sites by a random forest method with combined features

(2010) Zhi-Ping Liu et al.   BIOINFORMATICS

Pre-calculated protein structure alignments at the RCSB PDB website: Fig. 1.

(2010) Andreas Prlić et al.   BIOINFORMATICS

Struct-NB: predicting protein-RNA binding sites using structural features

(2010) Fadi Towfic et al.   International Journal of Data Mining and Bioinformatics

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets

(2010) H. Zhao et al.   NUCLEIC ACIDS RESEARCH

Exploiting structural and topological information to improve prediction of RNA-protein binding sites

(2009) Stefan R Maetschke et al.   BMC BIOINFORMATICS

RNA-binding residues in sequence space: Conservation and interaction patterns

(2009) Ruth V. Spriggs et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Identification of DNA-binding Proteins Using Structural, Electrostatic and Evolutionary Features

(2009) Guy Nimrod et al.   JOURNAL OF MOLECULAR BIOLOGY

Predicting DNA- and RNA-binding proteins from sequences with kernel methods

(2009) Xiaojian Shao et al.   JOURNAL OF THEORETICAL BIOLOGY

Cavities in protein–DNA and protein–RNA interfaces

(2009) Shrihari Sonavane et al.   NUCLEIC ACIDS RESEARCH

Optimal protein-RNA area, OPRA: A propensity-based method to identify RNA-binding sites on proteins

(2009) Laura Pérez-Cano et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human Genome

(2009) Mu Gao et al.   PLoS Computational Biology

RNA-binding proteins and post-transcriptional gene regulation

(2008) Tina Glisovic et al.   FEBS LETTERS

Prediction of Interacting Single-Stranded RNA Bases by Protein-Binding Patterns

(2008) Alexandra Shulman-Peleg et al.   JOURNAL OF MOLECULAR BIOLOGY

Common physical basis of macromolecule-binding sites in proteins

(2008) Yao Chi Chen et al.   NUCLEIC ACIDS RESEARCH

Dissecting protein–RNA recognition sites

(2008) Ranjit Prasad Bahadur et al.   NUCLEIC ACIDS RESEARCH

Classifying RNA-Binding Proteins Based on Electrostatic Properties

(2008) Shula Shazman et al.   PLoS Computational Biology