‘Z-DNA like’ fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response

Bacterial Riboswitches and Ribozymes Potently Activate the Human Innate Immune Sensor PKR

(2016) Chelsea M. Hull et al.   ACS Chemical Biology

Structured RNAs that evade or confound exonucleases: function follows form

(2016) Benjamin M Akiyama et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Elevation of CpG frequencies in influenza A genome attenuates pathogenicity but enhances host response to infection

(2016) Eleanor Gaunt et al.   eLife

Structure of the human 80S ribosome

(2015) Heena Khatter et al.   NATURE

High-resolution structure of the Escherichia coli ribosome

(2015) Jonas Noeske et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

DSSR: an integrated software tool for dissecting the spatial structure of RNA

(2015) Xiang-Jun Lu et al.   NUCLEIC ACIDS RESEARCH

High-resolution structure of the Escherichia coli ribosome

(2015) Jonas Noeske et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The purine riboswitch as a model system for exploring RNA biology and chemistry

(2014) Ely B. Porter et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA

(2014) Timothy M. Colussi et al.   NATURE

Structural basis for the inhibition of the eukaryotic ribosome

(2014) Nicolas Garreau de Loubresse et al.   NATURE

New tools provide a second look at HDV ribozyme structure, dynamics and cleavage

(2014) Gary J. Kapral et al.   NUCLEIC ACIDS RESEARCH

Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ)

(2014) Doyoun Kim et al.   NUCLEIC ACIDS RESEARCH

IFITs: Emerging Roles as Key Anti-Viral Proteins

(2014) Gregory I. Vladimer et al.   Frontiers in Immunology

Identification of the Catalytic Mg2+ Ion in the Hepatitis Delta Virus Ribozyme

(2013) Ji Chen et al.   BIOCHEMISTRY

Structural basis for viral 5′-PPP-RNA recognition by human IFIT proteins

(2013) Yazan M. Abbas et al.   NATURE

Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold

(2013) Joseph A Liberman et al.   Nature Chemical Biology

How much do van der Waals dispersion forces contribute to molecular recognition in solution?

(2013) Lixu Yang et al.   Nature Chemistry

Structural basis for Z-DNA binding and stabilization by the zebrafish Z-DNA dependent protein kinase PKZ

(2013) Matteo de Rosa et al.   NUCLEIC ACIDS RESEARCH

Secondary structure and domain architecture of the 23S and 5S rRNAs

(2013) Anton S. Petrov et al.   NUCLEIC ACIDS RESEARCH

An RNA folding motif: GNRA tetraloop–receptor interactions

(2013) Julie L. Fiore et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Visualizing Group II Intron Catalysis through the Stages of Splicing

(2012) Marco Marcia et al.   CELL

The ADAR protein family

(2012) Yiannis A Savva et al.   GENOME BIOLOGY

Aromatic Rings in Chemical and Biological Recognition: Energetics and Structures

(2011) Laura M. Salonen et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Metal Binding Motif in the Active Site of the HDV Ribozyme Binds Divalent and Monovalent Ions

(2011) Narayanan Veeraraghavan et al.   BIOCHEMISTRY

Accommodating variety in iron-responsive elements: Crystal structure of transferrin receptor 1 B IRE bound to iron regulatory protein 1

(2011) William E. Walden et al.   FEBS LETTERS

Mechanistic Strategies in the HDV Ribozyme: Chelated and Diffuse Metal Ion Interactions and Active Site Protonation

(2011) Narayanan Veeraraghavan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A processed noncoding RNA regulates an altruistic bacterial antiviral system

(2011) Tim R Blower et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Prevalence of syn nucleobases in the active sites of functional RNAs

(2011) J. E. Sokoloski et al.   RNA

Structure of transfer RNAs: similarity and variability

(2011) Richard Giegé et al.   Wiley Interdisciplinary Reviews-RNA

A 1.9 Å Crystal Structure of the HDV Ribozyme Precleavage Suggests both Lewis Acid and General Acid Mechanisms Contribute to Phosphodiester Cleavage

(2010) Jui-Hui Chen et al.   BIOCHEMISTRY

Z-DNA Binding Proteins as Targets for Structure-Based Virtual Screening

(2010) Doyoun Kim et al.   CURRENT DRUG TARGETS

DNA recognition and the precleavage state during single-stranded DNA transposition in D. radiodurans

(2010) Alison Burgess Hickman et al.   EMBO JOURNAL

Semiautomated model building for RNA crystallography using a directed rotameric approach

(2010) K. S. Keating et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermodynamic characterization of naturally occurring RNA tetraloops

(2010) J. P. Sheehy et al.   RNA

Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide

(2010) J. Zhou et al.   RNA

Structural Insights into RNA Recognition by the Alternate-Splicing Regulator CUG-Binding Protein 1

(2010) Marianna Teplova et al.   STRUCTURE

Structural Mechanism of Substrate RNA Recruitment in H/ACA RNA-Guided Pseudouridine Synthase

(2009) Jingqi Duan et al.   MOLECULAR CELL

Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase

(2009) Daniel J Klein et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

High-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNA

(2009) Senada Nozinovic et al.   NUCLEIC ACIDS RESEARCH

C2'-endo nucleotides as molecular timers suggested by the folding of an RNA domain

(2009) S. A. Mortimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Occurrence of Self-Cleaving Ribozymes

(2009) C.-H. T. Webb et al.   SCIENCE

Lone pair–π interactions: a new supramolecular bond?

(2008) Tiddo J. Mooibroek et al.   CRYSTENGCOMM

Crystal Structure of the Lysine Riboswitch Regulatory mRNA Element

(2008) Andrew D. Garst et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZα ADAR1

(2008) Sung Chul Ha et al.   NUCLEIC ACIDS RESEARCH

RNA backbone: Consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

(2008) J. S. Richardson et al.   RNA

Direct Observation of Hierarchical Folding in Single Riboswitch Aptamers

(2008) W. J. Greenleaf et al.   SCIENCE