An RNA folding motif: GNRA tetraloop–receptor interactions

Thermodynamic Origins of Monovalent Facilitated RNA Folding

(2012) Erik D. Holmstrom et al.   BIOCHEMISTRY

UNAC tetraloops: to what extent do they mimic GNRA tetraloops?

(2012) Qin Zhao et al.   BIOPOLYMERS

Cooperative Tertiary Interaction Network Guides RNA Folding

(2012) Reza Behrouzi et al.   CELL

The Role of Counterion Valence and Size in GAAA Tetraloop–Receptor Docking/Undocking Kinetics

(2012) Julie L. Fiore et al.   JOURNAL OF MOLECULAR BIOLOGY

Entropic origin of Mg2+-facilitated RNA folding

(2012) J. L. Fiore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Molecular Interactions That Stabilize RNA Tertiary Structure: RNA Motifs, Patterns, and Networks

(2011) Samuel E. Butcher et al.   ACCOUNTS OF CHEMICAL RESEARCH

Structure–Function Analysis from the Outside In: Long-Range Tertiary Contacts in RNA Exhibit Distinct Catalytic Roles

(2011) Tara L. Benz-Moy et al.   BIOCHEMISTRY

Removal of Covalent Heterogeneity Reveals Simple Folding Behavior for P4-P6 RNA

(2011) Max Greenfeld et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Functional roles of a tetraloop/receptor interacting module in a cyclic di-GMP riboswitch

(2011) Yuki Fujita et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Attenuation of loop-receptor interactions with pseudoknot formation

(2011) Kirill A. Afonin et al.   NUCLEIC ACIDS RESEARCH

Characterization of the kinetic and thermodynamic landscape of RNA folding using a novel application of isothermal titration calorimetry

(2011) Kirk A. Vander Meulen et al.   NUCLEIC ACIDS RESEARCH

Self-assembling RNA square

(2011) S. M. Dibrov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid global structure determination of large RNA and RNA complexes using NMR and small-angle X-ray scattering

(2010) Yun-Xing Wang et al.   METHODS

GNRA/receptor interacting modules: Versatile modular units for natural and artificial RNA architectures

(2010) Junya Ishikawa et al.   METHODS

Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA

(2010) Nicholas J. Reiter et al.   NATURE

Multiple native states reveal persistent ruggedness of an RNA folding landscape

(2010) Sergey V. Solomatin et al.   NATURE

Engineering cooperative tecto–RNA complexes having programmable stoichiometries

(2010) Irina V. Novikova et al.   NUCLEIC ACIDS RESEARCH

The Mrs1 Splicing Factor Binds the bI3 Group I Intron at Each of Two Tetraloop-Receptor Motifs

(2010) Caia D. S. Duncan et al.   PLoS One

Rate theories for biologists

(2010) Huan-Xiang Zhou   QUARTERLY REVIEWS OF BIOPHYSICS

Plasticity of the RNA kink turn structural motif

(2010) A. H. Antonioli et al.   RNA

Enthalpy-Driven RNA Folding: Single-Molecule Thermodynamics of Tetraloop−Receptor Tertiary Interaction†

(2009) Julie L. Fiore et al.   BIOCHEMISTRY

Designed RNAs with Two Peptide-Binding Units as Artificial Templates for Native Chemical Ligation of RNA-Binding Peptides

(2009) Norimasa Kashiwagi et al.   CHEMBIOCHEM

Coordinated control of a designedtrans-acting ligase ribozyme by a loop-receptor interaction

(2009) Shigeyoshi Matsumura et al.   FEBS LETTERS

Highly Active Low Magnesium Hammerhead Ribozyme

(2009) Agnieszka Fedoruk-Wyszomirska et al.   JOURNAL OF BIOCHEMISTRY

Minimum-Energy Path for a U6 RNA Conformational Change Involving Protonation, Base-Pair Rearrangement and Base Flipping

(2009) Vincenzo Venditti et al.   JOURNAL OF MOLECULAR BIOLOGY

The Influence of Monovalent Cation Size on the Stability of RNA Tertiary Structures

(2009) Dominic Lambert et al.   JOURNAL OF MOLECULAR BIOLOGY

Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch

(2009) Nadia Kulshina et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural basis of ligand binding by a c-di-GMP riboswitch

(2009) Kathryn D Smith et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A designed RNA selection: establishment of a stable complex between a target and selectant RNA via two coordinated interactions

(2009) Tomoaki Shiohara et al.   NUCLEIC ACIDS RESEARCH

The ribozyme core of group II introns: a structure in want of partners

(2009) François Michel et al.   TRENDS IN BIOCHEMICAL SCIENCES

Monovalent and Divalent Promoted GAAA Tetraloop-Receptor Tertiary Interactions from Freely Diffusing Single-Molecule Studies

(2008) Julie L. Fiore et al.   BIOPHYSICAL JOURNAL

The GANC Tetraloop: A Novel Motif in the Group IIC Intron Structure

(2008) Kevin S. Keating et al.   JOURNAL OF MOLECULAR BIOLOGY

Thermodynamics and Folding Pathway of Tetraloop Receptor-Mediated RNA Helical Packing

(2008) Kirk A. Vander Meulen et al.   JOURNAL OF MOLECULAR BIOLOGY

Global Molecular Structure and Interfaces:  Refining an RNA:RNA Complex Structure Using Solution X-ray Scattering Data

(2008) Xiaobing Zuo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Direct Measurement of Tertiary Contact Cooperativity in RNA Folding

(2008) Bernie D. Sattin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Critical Assessment of Nucleic Acid Electrostatics via Experimental and Computational Investigation of an Unfolded State Ensemble

(2008) Yu Bai et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Tertiary Interactions Determine the Accuracy of RNA Folding

(2008) Seema Chauhan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism

(2008) Elizabeth E. Regulski et al.   MOLECULAR MICROBIOLOGY

A rugged free energy landscape separates multiple functional RNA folds throughout denaturation

(2008) Mark A. Ditzler et al.   NUCLEIC ACIDS RESEARCH

Selection of a novel class of RNA–RNA interaction motifs based on the ligase ribozyme with defined modular architecture

(2008) Shoji P. Ohuchi et al.   NUCLEIC ACIDS RESEARCH

Annotation of tertiary interactions in RNA structures reveals variations and correlations

(2008) Y. Xin et al.   RNA

Direct Observation of Hierarchical Folding in Single Riboswitch Aptamers

(2008) W. J. Greenleaf et al.   SCIENCE

Crystal Structure of a Self-Spliced Group II Intron

(2008) N. Toor et al.   SCIENCE

Riboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMP

(2008) N. Sudarsan et al.   SCIENCE