Genetic Databases and Gene Editing Tools for Enhancing Crop Resistance against Abiotic Stress

Isolation and preliminary functional analysis of FvICE1, involved in cold and drought tolerance in Fragaria vesca through overexpression and CRISPR/Cas9 technologies

(2023) Jiaxin Han et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

CRISPR-Cas9-based precise engineering of SlHyPRP1 protein towards multi-stress tolerance in tomato

(2023) Mil Thi Tran et al.   Frontiers in Plant Science

CRISPR/Cas9‐mediated homology donor repair base editing confers glyphosate resistance to rice (Oryza sativa L.)

(2023) Sonia Khan Sony et al.   Frontiers in Plant Science

Multi-Omics Pipeline and Omics-Integration Approach to Decipher Plant’s Abiotic Stress Tolerance Responses

(2023) Rajib Roychowdhury et al.   Genes

Integrated Molecular and Bioinformatics Approaches for Disease-Related Genes in Plants

(2023) Alpana Joshi et al.   Plants-Basel

Recent Developments in CRISPR/Cas9 Genome-Editing Technology Related to Plant Disease Resistance and Abiotic Stress Tolerance

(2023) İbrahim Erdoğan et al.   Biology-Basel

Genome Editing and Improvement of Abiotic Stress Tolerance in Crop Plants

(2023) Rakesh Kumar Yadav et al.   Life-Basel

The rice heavy‐metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homoeostasis

(2022) Chuanliang Chu et al.   PLANT CELL AND ENVIRONMENT

Meta-QTLs, ortho-meta-QTLs and candidate genes for grain yield and associated traits in wheat (Triticum aestivum L.)

(2022) Dinesh Kumar Saini et al.   THEORETICAL AND APPLIED GENETICS

Efficient Genome Editing in Setaria italica Using CRISPR/Cas9 and Base Editors

(2022) Zhen Liang et al.   Frontiers in Plant Science

Selection of the high efficient sgRNA for CRISPR-Cas9 to edit herbicide related genes, PDS, ALS, and EPSPS in tomato

(2022) So Hee Yang et al.   Applied Biological Chemistry

Elucidation of drought tolerance potential of horsegram (Macrotyloma uniflorum Var.) germplasm using genome wide association studies

(2022) Sunny Choudhary et al.   GENE

A Putative Plasma Membrane Na+/H+ Antiporter GmSOS1 Is Critical for Salt Stress Tolerance in Glycine max

(2022) Minghui Zhang et al.   Frontiers in Plant Science

CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.)

(2022) Mohammad Shah Alam et al.   Plants-Basel

Consensus genomic regions associated with multiple abiotic stress tolerance in wheat and implications for wheat breeding

(2022) Mohammad Jafar Tanin et al.   Scientific Reports

Combining GWAS, Genome-Wide Domestication and a Transcriptomic Analysis Reveals the Loci and Natural Alleles of Salt Tolerance in Rice (Oryza sativa L.)

(2022) Yang Lv et al.   Frontiers in Plant Science

A Combination of a Genome-Wide Association Study and a Transcriptome Analysis Reveals circRNAs as New Regulators Involved in the Response to Salt Stress in Maize

(2022) Peng Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Functional genomics in plant abiotic stress responses and tolerance: From gene discovery to complex regulatory networks and their application in breeding

(2022) Kazuo SHINOZAKI et al.   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

Detection of Candidate Loci and Genes Related to Phosphorus Efficiency at Maturity through a Genome-Wide Association Study in Soybean

(2022) Qing Wang et al.   Agronomy-Basel

Molecular Breeding and Drought Tolerance in Chickpea

(2022) Ruchi Asati et al.   Life-Basel

CRISPR/Cas9-Mediated Knockout of HOS1 Reveals Its Role in the Regulation of Secondary Metabolism in Arabidopsis thaliana

(2021) Yury Shkryl et al.   Plants-Basel

PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants

(2021) Sebastian M. Siegner et al.   BMC BIOINFORMATICS

Genome engineering for crop improvement and future agriculture

(2021) Caixia Gao   CELL

Knockout of the entire family of AITR genes in Arabidopsis leads to enhanced drought and salinity tolerance without fitness costs

(2021) Siyu Chen et al.   BMC PLANT BIOLOGY

Agrobacterium-Mediated Capsicum annuum Gene Editing in Two Cultivars, Hot Pepper CM334 and Bell Pepper Dempsey

(2021) Sung-il Park et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

PmiREN2.0: from data annotation to functional exploration of plant microRNAs

(2021) Zhonglong Guo et al.   NUCLEIC ACIDS RESEARCH

CGFS ‐type glutaredoxin mutations reduce tolerance to multiple abiotic stresses in tomato

(2021) Tayebeh Kakeshpour et al.   PHYSIOLOGIA PLANTARUM

Genome editing in cereal crops: an overview

(2021) Jerlie Mhay Matres et al.   TRANSGENIC RESEARCH

The Development of Herbicide Resistance Crop Plants Using CRISPR/Cas9-Mediated Gene Editing

(2021) Huirong Dong et al.   Genes

Impact of heat and drought stresses on grain nutrient content in chickpea: Genome-wide marker-trait associations for protein, Fe and Zn

(2021) Srinivasan Samineni et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

The Functional Association of ACQOS/VICTR with Salt Stress Resistance in Arabidopsis thaliana Was Confirmed by CRISPR-Mediated Mutagenesis

(2021) Sang-Tae Kim et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Gene editing for barley grain quality improvement

(2021) Guillermo Garcia-Gimenez et al.   JOURNAL OF CEREAL SCIENCE

CRISPR/Cas9-mediated mutation of 5-oxoprolinase gene confers resistance to sulfonamide compounds in Arabidopsis

(2021) Ga-Jin Baeg et al.   Plant Biotechnology Reports

Optimization of T-DNA configuration with UBIQUITIN10 promoters and tRNA–sgRNA complexes promotes highly efficient genome editing in allotetraploid tobacco

(2021) Manoj Kumar et al.   PLANT CELL REPORTS

Mutation of GmAITR Genes by CRISPR/Cas9 Genome Editing Results in Enhanced Salinity Stress Tolerance in Soybean

(2021) Tianya Wang et al.   Frontiers in Plant Science

MicroRNA and cDNA-Microarray as Potential Targets against Abiotic Stress Response in Plants: Advances and Prospects

(2021) Tariq Pervaiz et al.   Agronomy-Basel

Role of Nitric Oxide and Protein S-Nitrosylation in Ischemia-Reperfusion Injury

(2021) Hyang-Mi Lee et al.   Antioxidants

Base-Editing-Mediated Artificial Evolution of OsALS1 In Planta to Develop Novel Herbicide-Tolerant Rice Germplasms

(2020) Yongjie Kuang et al.   Molecular Plant

Continuous evolution of SpCas9 variants compatible with non-G PAMs

(2020) Shannon M. Miller et al.   NATURE BIOTECHNOLOGY

Rational Improvement of Rice Yield and Cold Tolerance by Editing the Three Genes OsPIN5b, GS3, and OsMYB30 With the CRISPR–Cas9 System

(2020) Yafei Zeng et al.   Frontiers in Plant Science

Down Regulation and Loss of Auxin Response Factor 4 Function Using CRISPR/Cas9 Alters Plant Growth, Stomatal Function and Improves Tomato Tolerance to Salinity and Osmotic Stress

(2020) Sarah Bouzroud et al.   Genes

Allelic Variants of CRISPR/Cas9 Induced Mutation in an Inositol Trisphosphate 5/6 Kinase Gene Manifest Different Phenotypes in Barley

(2020) Vlčko et al.   Plants-Basel

Precision genome editing in plants: state-of-the-art in CRISPR/Cas9-based genome engineering

(2020) Naoki Wada et al.   BMC PLANT BIOLOGY

Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice

(2020) Bo Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Highly efficient homology‐directed repair using CRISPR/Cpf1‐geminiviral replicon in tomato

(2020) Tien Van Vu et al.   PLANT BIOTECHNOLOGY JOURNAL

Efficient CRISPR/Cas9‐based plant genomic fragment deletions by microhomology‐mediated end joining

(2020) Jiantao Tan et al.   PLANT BIOTECHNOLOGY JOURNAL

ARGONAUTE2 Enhances Grain Length and Salt Tolerance by Activating BIG GRAIN3 to Modulate Cytokinin Distribution in Rice

(2020) Wenchao Yin et al.   PLANT CELL

Unconstrained genome targeting with near-PAMless engineered CRISPR-Cas9 variants

(2020) Russell T. Walton et al.   SCIENCE

Roles of the Brassica napus DELLA Protein BnaA6.RGA, in Modulating Drought Tolerance by Interacting With the ABA Signaling Component BnaA10.ABF2

(2020) Jiajing Wu et al.   Frontiers in Plant Science

Principles and approaches of association mapping in plant breeding

(2020) Aminu Kurawa Ibrahim et al.   Tropical Plant Biology

CRISPR-Cas9 mediated genome editing of drought and salt tolerance (OsDST) gene in indica mega rice cultivar MTU1010

(2020) V. V. Santosh Kumar et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era

(2020) Luca Ambrosino et al.   Plants-Basel

Developing a novel artificial rice germplasm for dinitroaniline herbicide resistance by base editing of OsTubA2

(2020) Lang Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field

(2020) Alamin Alfatih et al.   PLANT CELL AND ENVIRONMENT

PHYTOCHROME-INTERACTING FACTOR-LIKE14 and SLENDER RICE1 interaction controls seedling growth under salt stress

(2020) Weiping Mo et al.   PLANT PHYSIOLOGY

Methods Favoring Homology-Directed Repair Choice in Response to CRISPR/Cas9 Induced-Double Strand Breaks

(2020) Han Yang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Detection of genomic regions associated with tiller number in Iranian bread wheat under different water regimes using genome-wide association study

(2020) Sayedeh Saba Bilgrami et al.   Scientific Reports

CRISPR/Cas: a powerful tool for gene function study and crop improvement

(2020) Dangquan Zhang et al.   Journal of Advanced Research

OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa

(2020) Erkui Yue et al.   Plants-Basel

Genome-wide association mapping reveals putative candidate genes for drought tolerance in barley

(2020) Rasha A. Tarawneh et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

CRISPR/Cas9 targeted mutagenesis of SlLBD40, a lateral organ boundaries domain transcription factor, enhances drought tolerance in tomato

(2020) Lun Liu et al.   PLANT SCIENCE

CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice

(2020) Takuya Ogata et al.   PLoS One

OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice

(2020) Xiang Zhang et al.   Rice

Transgene-Free Genome Editing in Tomato and Potato Plants Using Agrobacterium-Mediated Delivery of a CRISPR/Cas9 Cytidine Base Editor

(2019) Florian Veillet et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Methodologies for Improving HDR Efficiency

(2019) Mingjie Liu et al.   Frontiers in Genetics

Rice Os DOF 15 contributes to ethylene‐inhibited primary root elongation under salt stress

(2019) Hua Qin et al.   NEW PHYTOLOGIST

Enhanced rice salinity tolerance via CRISPR/Cas9-targeted mutagenesis of the OsRR22 gene

(2019) Anning Zhang et al.   MOLECULAR BREEDING

CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture

(2019) Kunling Chen et al.   Annual Review of Plant Biology

Genome-wide association of barley plant growth under drought stress using a nested association mapping population

(2019) Anh-Tung Pham et al.   BMC PLANT BIOLOGY

Advances in the Uptake and Transport Mechanisms and QTLs Mapping of Cadmium in Rice

(2019) Jingguang Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Response Regulator 9 and 10 Negatively Regulate Salinity Tolerance in Rice

(2019) Wei-Chen Wang et al.   PLANT AND CELL PHYSIOLOGY

Improved drought stress tolerance in Arabidopsis by CRISPR/dCas9 fusion with a Histone AcetylTransferase

(2019) Joaquin Felipe Roca Paixão et al.   Scientific Reports

Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage

(2019) Gul Nawaz et al.   3 Biotech

Knockout of SlMAPK3 enhances tolerance to heat stress involving ROS homeostasis in tomato plants

(2019) Wenqing Yu et al.   BMC PLANT BIOLOGY

Maize WRKY114 gene negatively regulates salt-stress tolerance in transgenic rice

(2019) Chen Bo et al.   PLANT CELL REPORTS

CRISPR/Cas9-Induced Mutagenesis of Semi-Rolled Leaf1,2 Confers Curled Leaf Phenotype and Drought Tolerance by Influencing Protein Expression Patterns and ROS Scavenging in Rice (Oryza sativa L.)

(2019) Shanyue Liao et al.   Agronomy-Basel

SNP-CRISPR: A Web Tool for SNP-Specific Genome Editing

(2019) Chiao-Lin Chen et al.   G3-Genes Genomes Genetics

OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice

(2018) Xiaohui Mao et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The Biology of CRISPR-Cas: Backward and Forward

(2018) Frank Hille et al.   CELL

WSL5, a pentatricopeptide repeat protein, is essential for chloroplast biogenesis in rice under cold stress

(2018) Xi Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A highly specific SpCas9 variant is identified by in vivo screening in yeast

(2018) Antonio Casini et al.   NATURE BIOTECHNOLOGY

A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.)

(2018) Dong-Dong Zeng et al.   PLANT CELL REPORTS

The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice

(2018) Zhennan Qiu et al.   PLANT SCIENCE

Mutations in a subfamily of abscisic acid receptor genes promote rice growth and productivity

(2018) Chunbo Miao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptomic signature of drought response in pearl millet (Pennisetum glaucum (L.) and development of web-genomic resources

(2018) Sarika Jaiswal et al.   Scientific Reports

High-Resolution Analysis of the Efficiency, Heritability, and Editing Outcomes of CRISPR/Cas9-Induced Modifications of NCED4 in Lettuce ( Lactuca sativa )

(2018) Lien D. Bertier et al.   G3-Genes Genomes Genetics

The Maize WRKY Transcription Factor ZmWRKY40 Confers Drought Resistance in Transgenic Arabidopsis

(2018) Chang-Tao Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Reduction of Tomato-Plant Chilling Tolerance by CRISPR–Cas9-Mediated SlCBF1 Mutagenesis

(2018) Rui Li et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Engineered CRISPR-Cas9 nuclease with expanded targeting space

(2018) Hiroshi Nishimasu et al.   SCIENCE

Directed evolution of CRISPR-Cas9 to increase its specificity

(2018) Jungjoon K. Lee et al.   Nature Communications

Na+/K+ Balance and Transport Regulatory Mechanisms in Weedy and Cultivated Rice (Oryza sativa L.) Under Salt Stress

(2018) Yuhua Zhang et al.   BMC PLANT BIOLOGY

CRISPR-PLANT v2: an online resource for highly specific guide RNA spacers based on improved off-target analysis

(2018) Bastian Minkenberg et al.   PLANT BIOTECHNOLOGY JOURNAL

Programmed DNA destruction by miniature CRISPR-Cas14 enzymes

(2018) Lucas B. Harrington et al.   SCIENCE

CRISPR/Cas9 genome editing in wheat

(2017) Dongjin Kim et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Reduced Drought Tolerance by CRISPR/Cas9-Mediated SlMAPK3 Mutagenesis in Tomato Plants

(2017) Liu Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Generation of thermosensitive male-sterile maize by targeted knockout of the ZmTMS5 gene

(2017) Jun Li et al.   Journal of Genetics and Genomics

Knock out of the annexin gene OsAnn3 via CRISPR/Cas9-mediated genome editing decreased cold tolerance in rice

(2017) Chunxiu Shen et al.   JOURNAL OF PLANT BIOLOGY

CRISPR-GE: A Convenient Software Toolkit for CRISPR-Based Genome Editing

(2017) Xianrong Xie et al.   Molecular Plant

Enhanced proofreading governs CRISPR–Cas9 targeting accuracy

(2017) Janice S. Chen et al.   NATURE

Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion

(2017) Zenpei Shimatani et al.   NATURE BIOTECHNOLOGY

A retrotransposon in an HKT1 family sodium transporter causes variation of leaf Na+ exclusion and salt tolerance in maize

(2017) Ming Zhang et al.   NEW PHYTOLOGIST

Production of low-Cs+ rice plants by inactivation of the K+ transporter OsHAK1 with the CRISPR-Cas system

(2017) Manuel Nieves-Cordones et al.   PLANT JOURNAL

Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice

(2017) Anjil Kumar Srivastava et al.   PLANT JOURNAL

The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β -Amylase Expression

(2017) Yan Lv et al.   PLANT PHYSIOLOGY

RNA-guided transcriptional activation via CRISPR/dCas9 mimics overexpression phenotypes in Arabidopsis

(2017) Jong-Jin Park et al.   PLoS One

In vivo genome editing with a small Cas9 orthologue derived from Campylobacter jejuni

(2017) Eunji Kim et al.   Nature Communications

Knockout of OsNramp5 using the CRISPR/Cas9 system produces low Cd-accumulating indica rice without compromising yield

(2017) Li Tang et al.   Scientific Reports

A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action

(2017) Shiran Abadi et al.   PLoS Computational Biology

OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice

(2017) Dengji Lou et al.   Frontiers in Plant Science

OsARM1, an R2R3 MYB Transcription Factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice

(2017) Feng-Zhu Wang et al.   Frontiers in Plant Science

Genetic engineering strategies for biotic and abiotic stress tolerance and quality enhancement in horticultural crops: a comprehensive review

(2017) Nehanjali Parmar et al.   3 Biotech

Genetic engineering strategies for biotic and abiotic stress tolerance and quality enhancement in horticultural crops: a comprehensive review

(2017) Nehanjali Parmar et al.   3 Biotech

Drought-responsive WRKY transcription factor genes TaWRKY1 and TaWRKY33 from wheat confer drought and/or heat resistance in Arabidopsis

(2016) Guan-Hua He et al.   BMC PLANT BIOLOGY

OsHKT1;4-mediated Na+ transport in stems contributes to Na+ exclusion from leaf blades of rice at the reproductive growth stage upon salt stress

(2016) Kei Suzuki et al.   BMC PLANT BIOLOGY

Structure and Engineering of Francisella novicida Cas9

(2016) Hisato Hirano et al.   CELL

PlantPReS: A database for plant proteome response to stress

(2016) Seyed Ahmad Mousavi et al.   Journal of Proteomics

Engineering Herbicide-Resistant Rice Plants through CRISPR/Cas9-Mediated Homologous Recombination of Acetolactate Synthase

(2016) Yongwei Sun et al.   Molecular Plant

High-fidelity CRISPR–Cas9 nucleases with no detectable genome-wide off-target effects

(2016) Benjamin P. Kleinstiver et al.   NATURE

CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering

(2016) Kornel Labun et al.   NUCLEIC ACIDS RESEARCH

Tomato facultative parthenocarpy results from SlAGAMOUS-LIKE 6 loss of function

(2016) Chen Klap et al.   PLANT BIOTECHNOLOGY JOURNAL

AnAgrobacterium-delivered CRISPR/Cas9 system for high-frequency targeted mutagenesis in maize

(2016) Si Nian Char et al.   PLANT BIOTECHNOLOGY JOURNAL

ARGOS8 variants generated by CRISPR-Cas9 improve maize grain yield under field drought stress conditions

(2016) Jinrui Shi et al.   PLANT BIOTECHNOLOGY JOURNAL

CsWRKY46 , a WRKY transcription factor from cucumber, confers cold resistance in transgenic-plant by regulating a set of cold-stress responsive genes in an ABA-dependent manner

(2016) Ying Zhang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

(2016) Omar O. Abudayyeh et al.   SCIENCE

Microarray Analysis of Rice d1 (RGA1) Mutant Reveals the Potential Role of G-Protein Alpha Subunit in Regulating Multiple Abiotic Stresses Such as Drought, Salinity, Heat, and Cold

(2016) Annie P. Jangam et al.   Frontiers in Plant Science

Genome-Wide Association Mapping of Acid Soil Resistance in Barley (Hordeum vulgare L.)

(2016) Gaofeng Zhou et al.   Frontiers in Plant Science

Genome-Wide Association Study Reveals a New QTL for Salinity Tolerance in Barley (Hordeum vulgare L.)

(2016) Yun Fan et al.   Frontiers in Plant Science

An alternative strategy for targeted gene replacement in plants using a dual-sgRNA/Cas9 design

(2016) Yongping Zhao et al.   Scientific Reports

Optimization of CRISPR/Cas9 genome editing to modify abiotic stress responses in plants

(2016) Yuriko Osakabe et al.   Scientific Reports

Characterization of WRKY transcription factors in Solanum lycopersicum reveals collinearity and their expression patterns under cold treatment

(2015) Lin Chen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System

(2015) Bernd Zetsche et al.   CELL

CRISPR–Cas9-mediated genome editing and guide RNA design

(2015) Michael V. Wiles et al.   MAMMALIAN GENOME

Engineered CRISPR-Cas9 nucleases with altered PAM specificities

(2015) Benjamin P. Kleinstiver et al.   NATURE

In vivo genome editing using Staphylococcus aureus Cas9

(2015) F. Ann Ran et al.   NATURE

Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition

(2015) Benjamin P Kleinstiver et al.   NATURE BIOTECHNOLOGY

MutMap accelerates breeding of a salt-tolerant rice cultivar

(2015) Hiroki Takagi et al.   NATURE BIOTECHNOLOGY

Genome-wide association mapping of cadmium accumulation in different organs of barley

(2015) Dezhi Wu et al.   NEW PHYTOLOGIST

Efficient targeted mutagenesis in potato by the CRISPR/Cas9 system

(2015) Shaohui Wang et al.   PLANT CELL REPORTS

Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis

(2015) Yong-Bo Duan et al.   PLANT MOLECULAR BIOLOGY

A Novel Little Membrane Protein Confers Salt Tolerance in Rice (Oryza sativa L.)

(2015) Xi Yuan et al.   PLANT MOLECULAR BIOLOGY REPORTER

Cas9-Guide RNA Directed Genome Editing in Soybean

(2015) Zhongsen Li et al.   PLANT PHYSIOLOGY

The Rice High-Affinity Potassium Transporter1;1 Is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor

(2015) Rong Wang et al.   PLANT PHYSIOLOGY

Targeted Mutagenesis, Precise Gene Editing, and Site-Specific Gene Insertion in Maize Using Cas9 and Guide RNA

(2015) Sergei Svitashev et al.   PLANT PHYSIOLOGY

Rationally engineered Cas9 nucleases with improved specificity

(2015) I. M. Slaymaker et al.   SCIENCE

DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice

(2015) Long-Gang Cui et al.   PLoS Genetics

Transcriptional regulation of drought response: a tortuous network of transcriptional factors

(2015) Dhriti Singh et al.   Frontiers in Plant Science

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool

(2015) Manuel Stemmer et al.   PLoS One

Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases

(2014) S. Bae et al.   BIOINFORMATICS

The Influence of Cadmium Toxicity on Some Physiological Parameters as Affected by Iron in Rice (Oryza SativaL.) Plant

(2014) Ramazan Ali Khavari-Nejad et al.   JOURNAL OF PLANT NUTRITION

CRISPR-P: A Web Tool for Synthetic Single-Guide RNA Design of CRISPR-System in Plants

(2014) Yang Lei et al.   Molecular Plant

The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation

(2014) Hui Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

Minimising toxicity of cadmium in plants—role of plant growth regulators

(2014) Mohd. Asgher et al.   PROTOPLASMA

Gene targeting using the Agrobacterium tumefaciens-mediated CRISPR-Cas system in rice

(2014) Rongfang Xu et al.   Rice

Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.)

(2013) Andrea Visioni et al.   BMC GENOMICS

Multiplex and homologous recombination–mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9

(2013) Jian-Feng Li et al.   NATURE BIOTECHNOLOGY

Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease

(2013) Vladimir Nekrasov et al.   NATURE BIOTECHNOLOGY

STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice

(2013) Mahantesha Naika et al.   PLANT AND CELL PHYSIOLOGY

A constitutively active form of a durum wheat Na+/H+ antiporter SOS1 confers high salt tolerance to transgenic Arabidopsis

(2013) Kaouthar Feki et al.   PLANT CELL REPORTS

OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice

(2013) Citao Liu et al.   PLANT MOLECULAR BIOLOGY

Genome-Wide Association Analysis of Aluminum Tolerance in Cultivated and Tibetan Wild Barley

(2013) Shengguan Cai et al.   PLoS One

Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis

(2013) Z. Hou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association mapping of salt tolerance in barley (Hordeum vulgare L.)

(2013) Nguyen Viet Long et al.   THEORETICAL AND APPLIED GENETICS

Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response

(2012) Ritesh Kumar et al.   PLANT MOLECULAR BIOLOGY

Cleavage of Phage DNA by the Streptococcus thermophilus CRISPR3-Cas System

(2012) Alfonso H. Magadán et al.   PLoS One

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

(2012) G. Gasiunas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress

(2011) Amit A Deokar et al.   BMC PLANT BIOLOGY

ABA-mediated transcriptional regulation in response to osmotic stress in plants

(2011) Yasunari Fujita et al.   JOURNAL OF PLANT RESEARCH

Evolution and classification of the CRISPR–Cas systems

(2011) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress

(2011) Shi-Yong Song et al.   PLANTA

Overexpression of OsVP1 and OsNHX1 Increases Tolerance to Drought and Salinity in Rice

(2010) Shiping Liu et al.   JOURNAL OF PLANT BIOLOGY

Genetic manipulation of Japonica rice using the OsBADH1 gene from Indica rice to improve salinity tolerance

(2010) Supaporn Hasthanasombut et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Heavy metal hyperaccumulating plants: How and why do they do it? And what makes them so interesting?

(2010) Nicoletta Rascio et al.   PLANT SCIENCE

Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes

(2010) Atsunori Fukuda et al.   PLANTA

A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control

(2009) X.-Y. Huang et al.   GENES & DEVELOPMENT

SuperSAGE: the drought stress-responsive transcriptome of chickpea roots

(2008) Carlos Molina et al.   BMC GENOMICS

Genome-wide analysis for identification of salt-responsive genes in common wheat

(2008) Kanako Kawaura et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Comparative mapping of HKT genes in wheat, barley, and rice, key determinants of Na+ transport, and salt tolerance

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