Pectic homogalacturonan sensed by Bacillus acts as host associated cue to promote establishment and persistence in the rhizosphere

Maize root exudates recruit Bacillus amyloliquefaciens OR2-30 to inhibit Fusarium graminearum infection

(2022) Shanshan Xie et al.   PHYTOPATHOLOGY

Bacillus subtilis Cell Differentiation, Biofilm Formation and Environmental Prevalence

(2022) Yuxuan Qin et al.   Microorganisms

Plant-associated Bacillus mobilizes its secondary metabolites upon perception of the siderophore pyochelin produced by a Pseudomonas competitor

(2022) Sofija Andrić et al.   ISME Journal

Sucrose triggers a novel signaling cascade promoting Bacillus subtilis rhizosphere colonization

(2021) Tao Tian et al.   ISME Journal

Bacillus subtilis biofilm formation and social interactions

(2021) Sofia Arnaouteli et al.   NATURE REVIEWS MICROBIOLOGY

Multiple strategies of plant colonization by beneficial endophytic Enterobacter sp. SA187

(2021) Lukas Synek et al.   ENVIRONMENTAL MICROBIOLOGY

Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization

(2021) Mathilde Nordgaard et al.   MicrobiologyOpen

Comparative study of the role of surfactin-triggered signalling in biofilm formation among different Bacillus species

(2021) Yan Zhang et al.   MICROBIOLOGICAL RESEARCH

Surfactin Stimulated by Pectin Molecular Patterns and Root Exudates Acts as a Key Driver of the Bacillus -Plant Mutualistic Interaction

(2021) Grégory Hoff et al.   mBio

Lipopeptide Interplay Mediates Molecular Interactions between Soil Bacilli and Pseudomonads

(2021) Sofija Andrić et al.   Microbiology Spectrum

Bacterial chemotaxis towards polysaccharide pectin by pectin-binding protein

(2020) Hidenori Konishi et al.   Scientific Reports

The exopolysaccharide–eDNA interaction modulates 3D architecture of Bacillus subtilis biofilm

(2020) Na Peng et al.   BMC MICROBIOLOGY

Qualitative and Quantitative Analyses of the Colonization Characteristics of Bacillus subtilis Strain NCD-2 on Cotton Root

(2020) Lihong Dong et al.   CURRENT MICROBIOLOGY

Root exudates-driven rhizosphere recruitment of the plant growth-promoting rhizobacterium Bacillus flexus KLBMP 4941 and its growth-promoting effect on the coastal halophyte Limonium sinense under salt stress

(2020) You-Wei Xiong et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Quorum sensing signal autoinducer-2 promotes root colonization of Bacillus velezensis SQR9 by affecting biofilm formation and motility

(2020) Qin Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bacillus Responses to Plant-Associated Fungal and Bacterial Communities

(2020) Sofija Andrić et al.   Frontiers in Microbiology

The Significance of Bacillus spp. in Disease Suppression and Growth Promotion of Field and Vegetable Crops

(2020) Dragana Miljaković et al.   Microorganisms

Bacillus velezensis: A Valuable Member of Bioactive Molecules within Plant Microbiomes

(2019) Muhammad Rabbee et al.   MOLECULES

Surfactin and fengycin contribute to the protection of a Bacillus subtilis strain against grape downy mildew by both direct effect and defence stimulation

(2019) Yan Li et al.   MOLECULAR PLANT PATHOLOGY

The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization

(2019) Carlos Molina-Santiago et al.   Nature Communications

Root exudates: from plant to rhizosphere and beyond

(2019) Vicente Vives-Peris et al.   PLANT CELL REPORTS

Oligogalacturonide production upon Arabidopsis thaliana–Botrytis cinerea interaction

(2019) Aline Voxeur et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mode of Action of Microbial Biological Control Agents Against Plant Diseases: Relevance Beyond Efficacy

(2019) Jürgen Köhl et al.   Frontiers in Plant Science

Biological control of tomato bacterial wilt by oxydifficidin and difficidin-producing Bacillus methylotrophicus DR-08

(2019) Seong Mi Im et al.   PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY

Induced root-secreted d-galactose functions as a chemoattractant and enhances the biofilm formation of Bacillus velezensis SQR9 in an McpA-dependent manner

(2019) Yunpeng Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characteristics and Application of a Novel Species of Bacillus: Bacillus velezensis

(2018) Miao Ye et al.   ACS Chemical Biology

Complete genome sequence of Bacillus velezensis QST713: A biocontrol agent that protects Agaricus bisporus crops against the green mould disease

(2018) Caroline Pandin et al.   JOURNAL OF BIOTECHNOLOGY

Identification of chemotaxis compounds in root exudates and their sensing chemoreceptors in plant growth-promoting rhizobacteria Bacillus amyloliquefaciens SQR9

(2018) Haichao Feng et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Exploring Elicitors of the Beneficial Rhizobacterium Bacillus amyloliquefaciens SQR9 to Induce Plant Systemic Resistance and Their Interactions With Plant Signaling Pathways

(2018) Gengwei Wu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence

(2018) Gloria Torres-Cortés et al.   Frontiers in Plant Science

Social behaviours by Bacillus subtilis : quorum sensing, kin discrimination and beyond

(2018) Margarita Kalamara et al.   MOLECULAR MICROBIOLOGY

Bacillus velezensis FZB42 in 2018: The Gram-Positive Model Strain for Plant Growth Promotion and Biocontrol

(2018) Ben Fan et al.   Frontiers in Microbiology

Biofilm formation is determinant in tomato rhizosphere colonization by Bacillus velezensis FZB42

(2017) Ameen Al-Ali et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

Characterization of the regulation of a plant polysaccharide utilization operon and its role in biofilm formation in Bacillus subtilis

(2017) Cameron Habib et al.   PLoS One

Live imaging of root–bacteria interactions in a microfluidics setup

(2017) Hassan Massalha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural-Product Antibiotics: Cues for Modulating Bacterial Biofilm Formation

(2017) Loni Townsley et al.   TRENDS IN MICROBIOLOGY

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Just in case it rains: building a hydrophobic biofilm the Bacillus subtilis way

(2016) Sofia Arnaouteli et al.   CURRENT OPINION IN MICROBIOLOGY

Cannibalism stress response in Bacillus subtilis

(2016) Carolin Höfler et al.   MICROBIOLOGY-SGM

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Bacillus subtilis Early Colonization of Arabidopsis thaliana Roots Involves Multiple Chemotaxis Receptors

(2016) Rosalie Allard-Massicotte et al.   mBio

Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates

(2015) Nan Zhang et al.   BMC GENOMICS

Functional advantages of dynamic protein disorder

(2015) Rebecca B. Berlow et al.   FEBS LETTERS

Dormant Bacillus spores protect their DNA in crystalline nucleoids against environmental stress

(2015) Christin Dittmann et al.   JOURNAL OF STRUCTURAL BIOLOGY

Thiopeptide antibiotics stimulate biofilm formation inBacillus subtilis

(2015) Rachel Bleich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant polysaccharides initiate underground crosstalk with bacilli by inducing synthesis of the immunogenic lipopeptide surfactin

(2015) Delphine Debois et al.   Environmental Microbiology Reports

Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development

(2015) Xueliang Lyu et al.   Scientific Reports

Organic acids from root exudates of banana help root colonization of PGPR strain Bacillus amyloliquefaciens NJN-6

(2015) Jun Yuan et al.   Scientific Reports

Plant Cell Wall–Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi

(2014) Christian P. Kubicek et al.   Annual Review of Phytopathology

Bacillaene and Sporulation Protect Bacillus subtilis from Predation by Myxococcus xanthus

(2014) Susanne Müller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The bacterial lipopeptide iturins induceVerticillium dahliaecell death by affecting fungal signalling pathways and mediate plant defence responses involved in pathogen-associated molecular pattern-triggered immunity

(2014) Qin Han et al.   ENVIRONMENTAL MICROBIOLOGY

Surfactin triggers biofilm formation ofBacillus subtilisin melon phylloplane and contributes to the biocontrol activity

(2013) Houda Zeriouh et al.   ENVIRONMENTAL MICROBIOLOGY

Cellulose as an Architectural Element in Spatially Structured Escherichia coli Biofilms

(2013) D. O. Serra et al.   JOURNAL OF BACTERIOLOGY

Sticking together: building a biofilm the Bacillus subtilis way

(2013) Hera Vlamakis et al.   NATURE REVIEWS MICROBIOLOGY

Effects of different plant root exudates and their organic acid components on chemotaxis, biofilm formation and colonization by beneficial rhizosphere-associated bacterial strains

(2013) Nan Zhang et al.   PLANT AND SOIL

Bacillus subtilis biofilm induction by plant polysaccharides

(2013) P. B. Beauregard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rhizosphere: its structure, bacterial diversity and significance

(2013) Pratibha Prashar et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Imaging secondary metabolism of Streptomyces sp. Mg1 during cellular lysis and colony degradation of competing Bacillus subtilis

(2012) Sarah R. Barger et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

(2012) Ben Fan et al.   BMC MICROBIOLOGY

Extracellular DNA Release by Undomesticated Bacillus subtilis Is Regulated by Early Competence

(2012) Olga Zafra et al.   PLoS One

Impact of rhizosphere factors on cyclic lipopeptide signature from the plant beneficial strain Bacillus amyloliquefaciensS499

(2011) Venant Nihorimbere et al.   FEMS MICROBIOLOGY ECOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Cell wall polysaccharides from fern leaves: Evidence for a mannan-rich Type III cell wall in Adiantum raddianum

(2011) Giovanna B. Silva et al.   PHYTOCHEMISTRY

Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids

(2010) Anton Bryksin et al.   BIOTECHNIQUES

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

KinD Is a Checkpoint Protein Linking Spore Formation to Extracellular-Matrix Production in Bacillus subtilis Biofilms

(2010) C. Aguilar et al.   mBio

The EpsE Flagellar Clutch Is Bifunctional and Synergizes with EPS Biosynthesis to Promote Bacillus subtilis Biofilm Formation

(2010) Sarah B. Guttenplan et al.   PLoS Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Difficidin and bacilysin produced by plant-associated Bacillus amyloliquefaciens are efficient in controlling fire blight disease

(2008) X.H. Chen et al.   JOURNAL OF BIOTECHNOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis

(2008) A. V. Banse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structurally diverse natural products that cause potassium leakage trigger multicellularity in Bacillus subtilis

(2008) D. Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Molecular Clutch Disables Flagella in the Bacillus subtilis Biofilm

(2008) K. M. Blair et al.   SCIENCE

Bacillus lipopeptides: versatile weapons for plant disease biocontrol

(2008) Marc Ongena et al.   TRENDS IN MICROBIOLOGY