Surfactin Stimulated by Pectin Molecular Patterns and Root Exudates Acts as a Key Driver of the Bacillus -Plant Mutualistic Interaction

Bacterial chemotaxis towards polysaccharide pectin by pectin-binding protein

(2020) Hidenori Konishi et al.   Scientific Reports

Apoplastic invasion patterns triggering plant immunity: plasma membrane sensing at the frontline

(2019) Romain Schellenberger et al.   MOLECULAR PLANT PATHOLOGY

Mode of Action of Microbial Biological Control Agents Against Plant Diseases: Relevance Beyond Efficacy

(2019) Jürgen Köhl et al.   Frontiers in Plant Science

Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands

(2019) Selma Vieira et al.   ISME Journal

Bacillusspecies in soil as a natural resource for plant health and nutrition

(2019) A.K. Saxena et al.   JOURNAL OF APPLIED MICROBIOLOGY

Reactive Oxygen Species in Plant Signaling

(2018) Cezary Waszczak et al.   Annual Review of Plant Biology

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Complete genome sequence of Bacillus velezensis QST713: A biocontrol agent that protects Agaricus bisporus crops against the green mould disease

(2018) Caroline Pandin et al.   JOURNAL OF BIOTECHNOLOGY

Identification of chemotaxis compounds in root exudates and their sensing chemoreceptors in plant growth-promoting rhizobacteria Bacillus amyloliquefaciens SQR9

(2018) Haichao Feng et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Pattern recognition receptors and signaling in plant-microbe interactions

(2018) Yusuke Saijo et al.   PLANT JOURNAL

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Bacillus velezensis FZB42 in 2018: The Gram-Positive Model Strain for Plant Growth Promotion and Biocontrol

(2018) Ben Fan et al.   Frontiers in Microbiology

Plant Growth-Promoting Rhizobacteria: Context, Mechanisms of Action, and Roadmap to Commercialization of Biostimulants for Sustainable Agriculture

(2018) Rachel Backer et al.   Frontiers in Plant Science

Plant signalling in symbiosis and immunity

(2017) Cyril Zipfel et al.   NATURE

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

Genetic engineering of the branched fatty acid metabolic pathway of Bacillus subtilis for the overproduction of surfactin C14 isoform

(2017) Debarun Dhali et al.   Biotechnology Journal

Key Impact of an Uncommon Plasmid on Bacillus amyloliquefaciens subsp. plantarum S499 Developmental Traits and Lipopeptide Production

(2017) Giulia Molinatto et al.   Frontiers in Microbiology

Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis Form an “Operational Group B. amyloliquefaciens” within the B. subtilis Species Complex

(2017) Ben Fan et al.   Frontiers in Microbiology

Genome and transcriptome analysis of surfactin biosynthesis in Bacillus amyloliquefaciens MT45

(2017) Yan Zhi et al.   Scientific Reports

Surfactin variants mediate species-specific biofilm formation and root colonization in Bacillus

(2016) Gajender Aleti et al.   ENVIRONMENTAL MICROBIOLOGY

Complete genome sequence of Bacillus amyloliquefaciens subsp. plantarum S499, a rhizobacterium that triggers plant defences and inhibits fungal phytopathogens

(2016) Giulia Molinatto et al.   JOURNAL OF BIOTECHNOLOGY

Spreading the news: subcellular and organellar reactive oxygen species production and signalling

(2016) Lorin Mignolet-Spruyt et al.   JOURNAL OF EXPERIMENTAL BOTANY

Systems-level Proteomics of Two Ubiquitous Leaf Commensals Reveals Complementary Adaptive Traits for Phyllosphere Colonization

(2016) Daniel B. Müller et al.   MOLECULAR & CELLULAR PROTEOMICS

Recognizing Plant Defense Priming

(2016) Ainhoa Martinez-Medina et al.   TRENDS IN PLANT SCIENCE

hybridSPAdes: an algorithm for hybrid assembly of short and long reads

(2015) Dmitry Antipov et al.   BIOINFORMATICS

Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates

(2015) Nan Zhang et al.   BMC GENOMICS

Signaling Mechanisms in Pattern-Triggered Immunity (PTI)

(2015) Jean Bigeard et al.   Molecular Plant

The quorum-sensing regulator ComA fromBacillus subtilisactivates transcription using topologically distinct DNA motifs

(2015) Diana Wolf et al.   NUCLEIC ACIDS RESEARCH

Pectin Enhances Bio-Control Efficacy by Inducing Colonization and Secretion of Secondary Metabolites by Bacillus amyloliquefaciens SQY 162 in the Rhizosphere of Tobacco

(2015) Kai Wu et al.   PLoS One

Plant polysaccharides initiate underground crosstalk with bacilli by inducing synthesis of the immunogenic lipopeptide surfactin

(2015) Delphine Debois et al.   Environmental Microbiology Reports

A Duo of Potassium-Responsive Histidine Kinases Govern the Multicellular Destiny of Bacillus subtilis

(2015) Roberto R. Grau et al.   mBio

From Cell Differentiation to Cell Collectives: Bacillus subtilis Uses Division of Labor to Migrate

(2015) Jordi van Gestel et al.   PLOS BIOLOGY

Role of fatty acids in Bacillus environmental adaptation

(2015) Sara E. Diomandé et al.   Frontiers in Microbiology

Deciphering the conserved genetic loci implicated in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum

(2015) Mohammad J. Hossain et al.   Frontiers in Plant Science

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Growth–Defense Tradeoffs in Plants: A Balancing Act to Optimize Fitness

(2014) Bethany Huot et al.   Molecular Plant

Ectopic Integration Vectors for Generating Fluorescent Promoter Fusions in Bacillus subtilis with Minimal Dark Noise

(2014) Stephanie Trauth et al.   PLoS One

MALDI-FTICR MS Imaging as a Powerful Tool to Identify Paenibacillus Antibiotics Involved in the Inhibition of Plant Pathogens

(2013) Delphine Debois et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Plant Defense Stimulation by Natural Isolates of Bacillus Depends on Efficient Surfactin Production

(2013) Hélène Cawoy et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Sticking together: building a biofilm the Bacillus subtilis way

(2013) Hera Vlamakis et al.   NATURE REVIEWS MICROBIOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Bacillus subtilis biofilm induction by plant polysaccharides

(2013) P. B. Beauregard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant growth-promoting rhizobacteria and root system functioning

(2013) Jordan Vacheron et al.   Frontiers in Plant Science

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

(2012) Ben Fan et al.   BMC MICROBIOLOGY

Biocontrol of tomato wilt disease byBacillus subtilisisolates from natural environments depends on conserved genes mediating biofilm formation

(2012) Yun Chen et al.   ENVIRONMENTAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Two-Component Response Regulator DegU Controls the Expression of Bacilysin in Plant-Growth-Promoting BacteriumBacillus amyloliquefaciensFZB42

(2012) Aruljothi Mariappan et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

The bacterial lipopeptide surfactin targets the lipid fraction of the plant plasma membrane to trigger immune-related defence responses

(2011) Guillaume Henry et al.   CELLULAR MICROBIOLOGY

Impact of rhizosphere factors on cyclic lipopeptide signature from the plant beneficial strain Bacillus amyloliquefaciensS499

(2011) Venant Nihorimbere et al.   FEMS MICROBIOLOGY ECOLOGY

Cell wall polysaccharides from fern leaves: Evidence for a mannan-rich Type III cell wall in Adiantum raddianum

(2011) Giovanna B. Silva et al.   PHYTOCHEMISTRY

Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids

(2010) Anton Bryksin et al.   BIOTECHNIQUES

Nonribosomal peptide synthetases: structures and dynamics

(2010) Matthias Strieker et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Regulation of CodY Activity through Modulation of Intracellular Branched-Chain Amino Acid Pools

(2010) S. R. Brinsmade et al.   JOURNAL OF BACTERIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Paracrine signaling in a bacterium

(2009) D. Lopez et al.   GENES & DEVELOPMENT

Bacillus amyloliquefaciens GA1 as a source of potent antibiotics and other secondary metabolites for biocontrol of plant pathogens

(2009) Anthony Arguelles-Arias et al.   Microbial Cell Factories

Insights into the Defense-Related Events Occurring in Plant Cells Following Perception of Surfactin-Type Lipopeptide fromBacillus subtilis

(2009) E. Jourdan et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Pectin structure and biosynthesis

(2008) D MOHNEN   CURRENT OPINION IN PLANT BIOLOGY

Genome analysis of Bacillus amyloliquefaciens FZB42 reveals its potential for biocontrol of plant pathogens

(2008) X.H. Chen et al.   JOURNAL OF BIOTECHNOLOGY

Bacillus lipopeptides: versatile weapons for plant disease biocontrol

(2008) Marc Ongena et al.   TRENDS IN MICROBIOLOGY