Structural Systems Biology Evaluation of Metabolic Thermotolerance in Escherichia coli

Modeling growth rates as a function of temperature: Model performance evaluation with focus on the suboptimal temperature range

(2012) E. Van Derlinden et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Structure-based prediction of protein–protein interactions on a genome-wide scale

(2012) Qiangfeng Cliff Zhang et al.   NATURE

Three-dimensional reconstruction of protein networks provides insight into human genetic disease

(2012) Xiujuan Wang et al.   NATURE BIOTECHNOLOGY

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

A Structural Systems Biology Approach for Quantifying the Systemic Consequences of Missense Mutations in Proteins

(2012) Tammy M. K. Cheng et al.   PLoS Computational Biology

Experimental Evolution of a Facultative Thermophile from a Mesophilic Ancestor

(2011) Ian K. Blaby et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011

(2011) J. D. Orth et al.   Molecular Systems Biology

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

FFAS server: novel features and applications

(2011) L. Jaroszewski et al.   NUCLEIC ACIDS RESEARCH

Molecular Strategy for Survival at a Critical High Temperature in Eschierichia coli

(2011) Masayuki Murata et al.   PLoS One

Physical limits of cells and proteomes

(2011) K. A. Dill et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ANAIS: Analysis of NimbleGen Arrays Interface

(2010) A. Simon et al.   BIOINFORMATICS

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

ASD: a comprehensive database of allosteric proteins and modulators

(2010) Z. Huang et al.   NUCLEIC ACIDS RESEARCH

BRENDA, the enzyme information system in 2011

(2010) M. Scheer et al.   NUCLEIC ACIDS RESEARCH

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

(2010) S. Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

EcoCyc: a comprehensive database of Escherichia coli biology

(2010) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Essential genes from Arctic bacteria used to construct stable, temperature-sensitive bacterial vaccines

(2010) B. N. Duplantis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model

(2010) Roger L. Chang et al.   PLoS Computational Biology

The molecular basis of the effect of temperature on enzyme activity

(2009) Roy M. Daniel et al.   BIOCHEMICAL JOURNAL

Predicting melting temperature directly from protein sequences

(2009) Tienhsiung Ku et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima

(2009) Y. Zhang et al.   SCIENCE

Genome-Wide Transcriptional Responses of Escherichia coli K-12 to Continuous Osmotic and Heat Stresses

(2008) T. S. Gunasekera et al.   JOURNAL OF BACTERIOLOGY

Selection and optimization of microbial hosts for biofuels production

(2008) Curt R. Fischer et al.   METABOLIC ENGINEERING

Comparison of the chemical and thermal denaturation of proteins by a two-state transition model

(2007) J. Ramprakash et al.   ANALYTICAL BIOCHEMISTRY