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(2023) Ariel Chazan et al.   NATURE

Multidecadal trend of increasing iron stress in Southern Ocean phytoplankton

(2023) Thomas J. Ryan-Keogh et al.   SCIENCE

Widespread use of proton-pumping rhodopsin in Antarctic phytoplankton

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Emerging Diversity of Channelrhodopsins and Their Structure-Function Relationships

(2022) Elena G. Govorunova et al.   Frontiers in Cellular Neuroscience

ColabFold: making protein folding accessible to all

(2022) Milot Mirdita et al.   NATURE METHODS

Dali server: structural unification of protein families

(2022) Liisa Holm   NUCLEIC ACIDS RESEARCH

The role of zinc in the adaptive evolution of polar phytoplankton

(2022) Naihao Ye et al.   Nature Ecology & Evolution

Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering

(2022) Willem J. de Grip et al.   Frontiers in Chemistry

UniProt: the Universal Protein Knowledgebase in 2023

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A bacterium from a mountain lake harvests light using both proton-pumping xanthorhodopsins and bacteriochlorophyll-based photosystems

(2022) Karel Kopejtka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities

(2021) Sacha N. Coesel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial rhodopsins are increasingly favoured over chlorophyll in High Nutrient Low Chlorophyll waters

(2021) Babak Hassanzadeh et al.   Environmental Microbiology Reports

Microbial Rhodopsins: The Last Two Decades

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Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Widespread phytoplankton blooms triggered by 2019–2020 Australian wildfires

(2021) Weiyi Tang et al.   NATURE

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

(2021) Kara Martin et al.   Nature Communications

Structure-based insights into evolution of rhodopsins

(2021) Dmitrii Zabelskii et al.   Communications Biology

Rhodopsins at a glance

(2021) Takashi Nagata et al.   JOURNAL OF CELL SCIENCE

Influence of global environmental Change on plankton

(2021) John A Raven et al.   JOURNAL OF PLANKTON RESEARCH

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Modified Rhodopsins From Aureobasidium pullulans Excel With Very High Proton-Transport Rates

(2021) Sabine Panzer et al.   Frontiers in Molecular Biosciences

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Temperature Dependency of Proton Pumping Activity for Marine Microbial Rhodopsin from Antartic Ocean

(2020) Se-Hwan Kim et al.   Scientific Reports

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

(2020) Drahomíra Faktorová et al.   NATURE METHODS

Schizorhodopsins: A family of rhodopsins from Asgard archaea that function as light-driven inward H+ pumps

(2020) Keiichi Inoue et al.   Science Advances

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

(2020) Stephen K Burley et al.   NUCLEIC ACIDS RESEARCH

Community-Level Responses to Iron Availability in Open Ocean Planktonic Ecosystems

(2019) Luigi Caputi et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Enzymerhodopsins: novel photoregulated catalysts for optogenetics

(2019) Shatanik Mukherjee et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators

(2019) David M. Needham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial rhodopsins are major contributors to the solar energy captured in the sea

(2019) Laura Gómez-Consarnau et al.   Science Advances

Reduction-dependent siderophore assimilation in a model pennate diatom

(2019) Tyler H. Coale et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proton-pumping rhodopsins are abundantly expressed by microbial eukaryotes in a high-Arctic fjord

(2018) Anna Vader et al.   ENVIRONMENTAL MICROBIOLOGY

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

(2018) Pierre Barbera et al.   SYSTEMATIC BIOLOGY

Two-component cyclase opsins of green algae are ATP-dependent and light-inhibited guanylyl cyclases

(2018) Yuehui Tian et al.   BMC BIOLOGY

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

(2017) Thomas Mock et al.   NATURE

The integral role of iron in ocean biogeochemistry

(2017) Alessandro Tagliabue et al.   NATURE

Nutrient co-limitation at the boundary of an oceanic gyre

(2017) Thomas J. Browning et al.   NATURE

Tubulin or Not Tubulin: Heading Toward Total Protein Staining as Loading Control in Western Blots

(2017) Christian P. Moritz   PROTEOMICS

Building a locally diploid genome and transcriptome of the diatom Fragilariopsis cylindrus

(2017) Pirita Paajanen et al.   Scientific Data

Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology

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Marine phytoplankton and the changing ocean iron cycle

(2016) D. A. Hutchins et al.   Nature Climate Change

Marine diatom proteorhodopsins and their potential role in coping with low iron availability

(2015) Adrian Marchetti et al.   ISME Journal

CCTOP: a Consensus Constrained TOPology prediction web server

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Optogenetic manipulation of cGMP in cells and animals by the tightly light-regulated guanylyl-cyclase opsin CyclOp

(2015) Shiqiang Gao et al.   Nature Communications

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Electrophysiological Characterization of Membrane Transport Proteins

(2013) Christof Grewer et al.   Annual Review of Biophysics

Molecular and evolutionary aspects of microbial sensory rhodopsins

(2013) Keiichi Inoue et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Of ion pumps, sensors and channels — Perspectives on microbial rhodopsins between science and history

(2013) Mathias Grote et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Protter: interactive protein feature visualization and integration with experimental proteomic data

(2013) Ulrich Omasits et al.   BIOINFORMATICS

Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms

(2013) Oliver P. Ernst et al.   CHEMICAL REVIEWS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria

(2013) I. Gushchin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial, archaeal and viral-like rhodopsins from the Red Sea

(2013) Alon Philosof et al.   Environmental Microbiology Reports

Adding unaligned sequences into an existing alignment using MAFFT and LAST

(2012) Kazutaka Katoh et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

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(2012) Omri M Finkel et al.   ISME Journal

Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability

(2012) A. Marchetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive strategies by Southern Ocean phytoplankton to lessen iron limitation: Uptake of organically complexed iron and reduced cellular iron requirements

(2011) Robert F. Strzepek et al.   LIMNOLOGY AND OCEANOGRAPHY

A gene-fusion strategy for stoichiometric and co-localized expression of light-gated membrane proteins

(2011) Sonja Kleinlogel et al.   NATURE METHODS

Nanopatterned protein microrings from a diatom that direct silica morphogenesis

(2011) A. Scheffel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A bacterial proteorhodopsin proton pump in marine eukaryotes

(2011) Claudio H. Slamovits et al.   Nature Communications

Serious Overestimation in Quantitative PCR by Circular (Supercoiled) Plasmid Standard: Microalgal pcna as the Model Gene

(2010) Yubo Hou et al.   PLoS One

Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates

(2010) S. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of Ocean Acidification on Iron Availability to Marine Phytoplankton

(2010) D. Shi et al.   SCIENCE

Functional evolution of photochemical energy transformations in oxygen-producing organisms

(2009) John A. Raven   FUNCTIONAL PLANT BIOLOGY