Protter: interactive protein feature visualization and integration with experimental proteomic data

Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome

(2013) Ulrich Omasits et al.   GENOME RESEARCH

N-Glycoprotein SRMAtlas

(2013) Ruth Hüttenhain et al.   MOLECULAR & CELLULAR PROTEOMICS

Direct identification of ligand-receptor interactions on living cells and tissues

(2012) Andreas P Frei et al.   NATURE BIOTECHNOLOGY

The UCSC Genome Browser database: extensions and updates 2013

(2012) Laurence R. Meyer et al.   NUCLEIC ACIDS RESEARCH

A guideline to proteome-wide α-helical membrane protein topology predictions

(2012) Konstantinos D. Tsirigos et al.   PROTEOMICS

CD proteome and beyond - technologies for targeting the immune cell surfaceome

(2011) Thomas Bock   Frontiers in Bioscience-Landmark

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

neXtProt: a knowledge platform for human proteins

(2011) L. Lane et al.   NUCLEIC ACIDS RESEARCH

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

PeptideClassifier for protein inference and targeted quantitative proteomics

(2010) Ermir Qeli et al.   NATURE BIOTECHNOLOGY

Visualization of omics data for systems biology

(2010) Nils Gehlenborg et al.   NATURE METHODS

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

(2009) Bernd Wollscheid et al.   NATURE BIOTECHNOLOGY

Selected reaction monitoring for quantitative proteomics: a tutorial

(2008) Vinzenz Lange et al.   Molecular Systems Biology

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY