Occurrence and temporal distribution of extended-spectrum β-lactamase-producing Escherichia coli in clams from the Central Adriatic, Italy

Convergence of virulence and resistance in international clones of WHO critical priority enterobacterales isolated from Marine Bivalves

(2022) Vanessa Bueris et al.   Scientific Reports

Escherichia marmotae—a Human Pathogen Easily Misidentified as Escherichia coli

(2022) Audun Sivertsen et al.   Microbiology Spectrum

Prevalence and Characterization of Extended-Spectrum β-Lactamase- and Carbapenemase-Producing Enterobacterales from Tunisian Seafood

(2022) Mehdi Sola et al.   Microorganisms

Comprehensive Genome and Plasmidome Analysis of Antimicrobial Resistant Bacteria in Wastewater Treatment Plant Effluent of Tokyo

(2022) Tsuyoshi Sekizuka et al.   Antibiotics-Basel

A systematic review and meta-analysis on antimicrobial resistance in marine bivalves

(2022) Elisa Albini et al.   Frontiers in Microbiology

Escherichia ruysiae sp. nov., a novel Gram-stain-negative bacterium, isolated from a faecal sample of an international traveller

(2021) Boas C. L. van der Putten et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Antibiotic resistance in shellfish and major inland pollution sources in the drainage basin of Kamak Bay, Republic of Korea

(2021) Sang Hyeon Jeong et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Extended spectrum beta-lactamase-producing Escherichia coli from extraintestinal infections in humans and from food-producing animals, in Italy: a “One Health” study

(2021) Maria Giufrè et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

ResFinder 4.0 for predictions of phenotypes from genotypes

(2020) Valeria Bortolaia et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

In silico Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data

(2020) Anna Maria Malberg Tetzschner et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Escherichia coli ST457: an emerging extended-spectrum β-lactam resistant lineage with reservoirs in wildlife and food-producing animals

(2020) Kristina Nesporova et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder

(2020) Markus H K Johansson et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The global prevalence and trend of human intestinal carriage of ESBL-producing Escherichia coli in the community

(2020) Yihienew M Bezabih et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The population genetics of pathogenic Escherichia coli

(2020) Erick Denamur et al.   NATURE REVIEWS MICROBIOLOGY

Characterization of water treatment-resistant and multidrug-resistant urinary pathogenic Escherichia coli in treated wastewater

(2020) Shuai Zhi et al.   WATER RESEARCH

Genomic and molecular characterisation of Escherichia marmotae from wild rodents in Qinghai-Tibet plateau as a potential pathogen

(2019) Sha Liu et al.   Scientific Reports

Extended-Spectrum β-Lactamase-Producing Enterobacteriaceae: Update on Molecular Epidemiology and Treatment Options

(2019) Gisele Peirano et al.   DRUGS

Investigation of Extended-Spectrum and AmpC β-Lactamase–Producing Enterobacteriaceae from Retail Seafood in Berlin, Germany

(2018) THI THU TRA VU et al.   JOURNAL OF FOOD PROTECTION

Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis

(2018) Evelina Tacconelli et al.   LANCET INFECTIOUS DISEASES

PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens

(2017) Ea Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Mechanisms of quinolone action and resistance: where do we stand?

(2017) Susana Correia et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Marine Bivalve Mollusks As Possible Indicators of Multidrug-Resistant Escherichia coli and Other Species of the Enterobacteriaceae Family

(2017) Didrik H. Grevskott et al.   Frontiers in Microbiology

A comparison of extended spectrum β-lactamase producing Escherichia coli from clinical, recreational water and wastewater samples associated in time and location

(2017) Silje B. Jørgensen et al.   PLoS One

Multidrug-resistant and epidemic clones of Escherichia coli from natural beds of Venus clam

(2016) C. Vignaroli et al.   FOOD MICROBIOLOGY

Antimicrobial Resistance of Escherichia coli, Enterococci, Pseudomonas aeruginosa, and Staphylococcus aureus from Raw Fish and Seafood Imported into Switzerland

(2016) RENATE BOSS et al.   JOURNAL OF FOOD PROTECTION

Occurrence and Antimicrobial Resistance ofEscherichia coliin Oysters and Mussels from Atlantic Canada

(2015) Erin E. Rees et al.   Foodborne Pathogens and Disease

Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana

(2015) Sha Liu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

(2015) Katrine G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Escherichia coli ST131, an Intriguing Clonal Group

(2014) M.-H. Nicolas-Chanoine et al.   CLINICAL MICROBIOLOGY REVIEWS

Virulence potential and adherence properties of Escherichia coli that produce CTX-M and NDM β-lactamases

(2013) Gisele Peirano et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Sources of variation of Escherichia coli concentrations in bivalve molluscs

(2013) R. J. Lee et al.   JOURNAL OF WATER AND HEALTH

Detection of quinolone-resistant Escherichia coli isolates belonging to clonal groups O25b:H4-B2-ST131 and O25b:H4-D-ST69 in raw sewage and river water in Barcelona, Spain

(2012) M. Colomer-Lluch et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

(2012) K. A. Jolley et al.   MICROBIOLOGY-SGM

Biofilm Formation by and Thermal Niche and Virulence Characteristics of Escherichia spp.

(2011) Danielle J. Ingle et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

(2011) A.-P. Magiorakos et al.   CLINICAL MICROBIOLOGY AND INFECTION

Characterization of the cryptic Escherichia lineages: rapid identification and prevalence

(2011) Olivier Clermont et al.   ENVIRONMENTAL MICROBIOLOGY

Cryptic Lineages of the Genus Escherichia

(2009) S. T. Walk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Multilocus Sequence Typing ofClostridium difficile

(2009) David Griffiths et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains

(2008) Françoise Jaureguy et al.   BMC GENOMICS