PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data

(2016) Philip T. L. C. Clausen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Quinolone Resistance Mechanisms AmongSalmonella entericain Malaysia

(2016) Kwai Lin Thong et al.   Microbial Drug Resistance

Bioinformatics of antimicrobial resistance in the age of molecular epidemiology

(2015) Andrew G McArthur et al.   CURRENT OPINION IN MICROBIOLOGY

Characterisation of novel mutations involved in quinolone resistance in Escherichia coli isolated from imported shrimp

(2015) Mohamed Nawaz et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

(2015) Phelim Bradley et al.   Nature Communications

Polymorphism of genes encoding PmrAB in colistin-resistant strains of Escherichia coli and Salmonella enterica isolated from poultry and swine

(2014) Alberto Quesada et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

(2013) Sushim Kumar Gupta et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data

(2013) N. Stoesser et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Mutations in the rpsL Gene Are Involved in Streptomycin Resistance in Campylobacter coli

(2010) Satu Olkkola et al.   Microbial Drug Resistance

Genetic Analysis of Colistin Resistance in Salmonella enterica Serovar Typhimurium

(2009) S. Sun et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Multiple Regulatory Pathways Associated with High-Level Ciprofloxacin and Multidrug Resistance in Salmonella enterica Serovar Enteritidis: Involvement of ramA and Other Global Regulators

(2008) E. O'Regan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prevalence of Quinolone Resistance Mechanisms and Associations to Minimum Inhibitory Concentrations in Quinolone-Resistant Escherichia coli Isolated from Humans and Swine in Denmark

(2008) Lina Maria Cavaco et al.   Microbial Drug Resistance