Prevalence and predictors of data and code sharing in the medical and health sciences: systematic review with meta-analysis of individual participant data

Quality Reporting of Systematic Review and Meta-Analysis According to PRISMA 2020 Guidelines: Results from Recently Published Papers in the Korean Journal of Radiology

(2022) Ho Young Park et al.   KOREAN JOURNAL OF RADIOLOGY

Reproducible Research Practices in the Plastic Surgery Literature

(2022) Mona Ascha et al.   PLASTIC AND RECONSTRUCTIVE SURGERY

Meta‐analysis of prevalence: I 2 statistic and how to deal with heterogeneity

(2022) Celina Borges Migliavaca et al.   Research Synthesis Methods

Public availability of HIV-1 drug resistance sequence and treatment data: a systematic review

(2022) Soo-Yon Rhee et al.   Lancet Microbe

Many researchers were not compliant with their published data sharing statement: mixed-methods study

(2022) Mirko Gabelica et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Dental Research Data Availability and Quality According to the FAIR Principles

(2022) S.E. Uribe et al.   JOURNAL OF DENTAL RESEARCH

Paths towards greater consensus building in experimental biology

(2022) Dominique G. Roche et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Open data and data sharing in articles about COVID-19 published in preprint servers medRxiv and bioRxiv

(2022) Josip Strcic et al.   SCIENTOMETRICS

Reporting and data sharing level for COVID-19 vaccine trials: A cross-sectional study

(2022) Yuting Duan et al.   EBioMedicine

Data Sharing and Reanalyses Among Randomized Clinical Trials Published in Surgical Journals Before and After Adoption of a Data Availability and Reproducibility Policy

(2022) Damien Bergeat et al.   JAMA Network Open

Using current research information systems to investigate data acquisition and data sharing practices of computer scientists

(2022) Antti Mikael Rousi   JOURNAL OF LIBRARIANSHIP AND INFORMATION SCIENCE

Data and code availability statements in systematic reviews of interventions were often missing or inaccurate: a content analysis

(2022) Matthew J. Page et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Data sharing practices across knowledge domains: A dynamic examination of data availability statements in PLOS ONE publications

(2022) Chenyue Jiao et al.   JOURNAL OF INFORMATION SCIENCE

Reproducibility of COVID-19 pre-prints

(2022) Annie Collins et al.   SCIENTOMETRICS

A review of reproducible and transparent research practices in urology publications from 2014 to2018

(2022) Shelby Rauh et al.   BMC Urology

Reporting and transparent research practices in sports medicine and orthopaedic clinical trials: a meta-research study

(2022) Robert Schulz et al.   BMJ Open

How often do cancer researchers make their data and code available and what factors are associated with sharing?

(2022) Daniel G. Hamilton et al.   BMC Medicine

Changing patterns in reporting and sharing of review data in systematic reviews with meta-analysis of the effects of interventions: cross sectional meta-research study

(2022) Phi-Yen Nguyen et al.   BMJ-British Medical Journal

Automated screening of COVID-19 preprints: can we help authors to improve transparency and reproducibility?

(2021) Tracey Weissgerber et al.   NATURE MEDICINE

Assessment of transparency indicators across the biomedical literature: How open is open?

(2021) Stylianos Serghiou et al.   PLOS BIOLOGY

Evaluation of Data Sharing After Implementation of the International Committee of Medical Journal Editors Data Sharing Statement Requirement

(2021) Valentin Danchev et al.   JAMA Network Open

Intent to share Annals of Internal Medicine's trial data was not associated with data re-use

(2021) Claude Pellen et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

GDPR obstructs cancer research data sharing

(2021) Elizabeth Gourd   LANCET ONCOLOGY

A descriptive analysis of the data availability statements accompanying medRxiv preprints and a comparison with their published counterparts

(2021) Luke A. McGuinness et al.   PLoS One

The PRISMA 2020 statement: an updated guideline for reporting systematic reviews

(2021) Matthew J. Page et al.   Systematic Reviews

Data Sharing in Biomedical Sciences: A Systematic Review of Incentives

(2021) Thijs Devriendt et al.   Biopreservation and Biobanking

Systematic review of the status of veterinary epidemiological research in two species regarding the FAIR guiding principles

(2021) Anne Meyer et al.   BMC Veterinary Research

A computational reproducibility study of PLOS ONE articles featuring longitudinal data analyses

(2021) Heidi Seibold et al.   PLoS One

Data sharing practices and data availability upon request differ across scientific disciplines

(2021) Leho Tedersoo et al.   Scientific Data

Estimating the reproducibility of social learning research published between 1955 and 2018

(2021) Riana Minocher et al.   Royal Society Open Science

Evaluating Reproducibility and Transparency in Emergency Medicine Publications

(2021) Bradley Johnson et al.   Western Journal of Emergency Medicine

Methodological standards for conducting and reporting meta-analyses: Ensuring the replicability of meta-analyses of pharmacist-led medication review

(2021) Aline F. Bonetti et al.   Research in Social & Administrative Pharmacy

Evaluating the reproducibility of research in obstetrics and gynecology

(2021) Shelby Rauh et al.   European Journal of Obstetrics & Gynecology and Reproductive Biology

Randomization, blinding, data handling and sample size estimation in papers published in Veterinary Anaesthesia and Analgesia in 2009 and 2019

(2021) Brittany A. Munro et al.   VETERINARY ANAESTHESIA AND ANALGESIA

Challenges for assessing replicability in preclinical cancer biology

(2021) Timothy M Errington et al.   eLife

A review of available software for adaptive clinical trial design

(2020) Michael John Grayling et al.   Clinical Trials

Open Data Revolution in Clinical Research: Opportunities and Challenges

(2020) Mohamed H. Shahin et al.   CTS-Clinical and Translational Science

Is useful research data usually shared? An investigation of genome-wide association study summary statistics

(2020) Mike Thelwall et al.   PLoS One

Do oncology researchers adhere to reproducible and transparent principles? A cross-sectional survey of published oncology literature

(2020) Corbin Walters et al.   BMJ Open

No raw data, no science: another possible source of the reproducibility crisis

(2020) Tsuyoshi Miyakawa   Molecular Brain

The citation advantage of linking publications to research data

(2020) Giovanni Colavizza et al.   PLoS One

Data-sharing recommendations in biomedical journals and randomised controlled trials: an audit of journals following the ICMJE recommendations

(2020) Maximilian Siebert et al.   BMJ Open

Availability of Statistical Code From Studies Using Medicare Data in General Medical Journals

(2020) Jennie DeBlanc et al.   JAMA Internal Medicine

Tracing open data in emergencies: The case of the COVID‐19 pandemic

(2020) Konstantinos Gkiouras et al.   EUROPEAN JOURNAL OF CLINICAL INVESTIGATION

Reproducible research practices and transparency in reproductive endocrinology and infertility articles

(2020) James M. Kemper et al.   FERTILITY AND STERILITY

Low availability of code in ecology: A call for urgent action

(2020) Antica Culina et al.   PLOS BIOLOGY

Evaluation of reproducible and transparent research practices in pulmonology

(2020) C.A. Smith et al.   Pulmonology

An analysis of key indicators of reproducibility in radiology

(2020) Bryan D. Wright et al.   Insights into Imaging

Evaluation of indicators supporting reproducibility and transparency within cardiology literature

(2020) J Michael Anderson et al.   HEART

Funders’ data-sharing policies in therapeutic research: A survey of commercial and non-commercial funders

(2020) Jeanne Fabiola Gaba et al.   PLoS One

Data sharing policies of journals in life, health, and physical sciences indexed in Journal Citation Reports

(2020) Jihyun Kim et al.   PeerJ

The archives are half-empty: an assessment of the availability of microbial community sequencing data

(2020) Stephanie D. Jurburg et al.   Communications Biology

An evaluation of the practice of transparency and reproducibility in addiction medicine literature

(2020) Mopileola Tomi Adewumi et al.   ADDICTIVE BEHAVIORS

On code sharing and model documentation of published individual and agent-based models

(2020) Marco A. Janssen et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Transparency in clinical trials: Adding value to paediatric dental research

(2020) Maximiliano Sérgio Cenci et al.   International Journal of Paediatric Dentistry

Journal policies and editors’ opinions on peer review

(2020) Daniel G Hamilton et al.   eLife

Transparency assessment of COVID-19 models

(2020) Mohammad S Jalali et al.   Lancet Global Health

Many meta-analyses of rare events in the Cochrane Database of Systematic Reviews were underpowered

(2020) Pengli Jia et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Assessing data availability and research reproducibility in hydrology and water resources

(2019) James H. Stagge et al.   Scientific Data

Effect of impact factor and discipline on journal data sharing policies

(2019) David B. Resnik et al.   Accountability in Research-Policies and Quality Assurance

Authors of trials from high-ranking anesthesiology journals were not willing to share raw data

(2019) Mirko Gabelica et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

An assessment of transparency and reproducibility‐related research practices in otolaryngology

(2019) Austin L. Johnson et al.   LARYNGOSCOPE

A systematic review and evaluation of Zika virus forecasting and prediction research during a public health emergency of international concern

(2019) Pei-Ying Kobres et al.   PLoS Neglected Tropical Diseases

Data sharing practices in randomized trials of addiction interventions

(2019) Matt Vassar et al.   ADDICTIVE BEHAVIORS

Consideration of confounding was suboptimal in the reporting of observational studies in psychiatry: a meta-epidemiological study

(2019) Klaus Munkholm et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Noncommercial Funders’ Policies on Trial Registration, Access to Summary Results, and Individual Patient Data Availability

(2018) Nicholas J. DeVito et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Reproducible research practices are underused in systematic reviews of biomedical interventions

(2018) Matthew J. Page et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Data sharing in PLOS ONE: An analysis of Data Availability Statements

(2018) Lisa M. Federer et al.   PLoS One

An empirical analysis of journal policy effectiveness for computational reproducibility

(2018) Victoria Stodden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Data sharing and reanalysis of randomized controlled trials in leading biomedical journals with a full data sharing policy: survey of studies published inThe BMJandPLOS Medicine

(2018) Florian Naudet et al.   BMJ-British Medical Journal

Data sharing and reanalysis of randomized controlled trials in leading biomedical journals with a full data sharing policy: survey of studies published inThe BMJandPLOS Medicine

(2018) Florian Naudet et al.   BMJ-British Medical Journal

Populating the Data Ark: An attempt to retrieve, preserve, and liberate data from the most highly-cited psychology and psychiatry articles

(2018) Tom E. Hardwicke et al.   PLoS One

Reproducible research practices, transparency, and open access data in the biomedical literature, 2015–2017

(2018) Joshua D. Wallach et al.   PLOS BIOLOGY

Impact of HIPAA’s minimum necessary standard on genomic data sharing

(2017) Barbara J Evans et al.   GENETICS IN MEDICINE

Avoidable Waste in Ophthalmic Epidemiology: A Review of Blindness Prevalence Surveys in Low and Middle Income Countries 2000–2014

(2017) Jacqueline Ramke et al.   OPHTHALMIC EPIDEMIOLOGY

Do journal data sharing mandates work? Life sciences evidence from Dryad

(2017) Mike Thelwall et al.   Aslib Journal of Information Management

Data set mentions and citations: A content analysis of full-text publications

(2017) Mengnan Zhao et al.   Journal of the Association for Information Science and Technology

(Un)Available upon Request: Field Experiment on Researchers' Willingness to Share Supplementary Materials

(2017) Michal Krawczyk et al.   Accountability in Research-Policies and Quality Assurance

The reporting of studies using routinely collected health data was often insufficient

(2016) Lars G. Hemkens et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Has open data arrived at theBritish Medical Journal (BMJ)? An observational study

(2016) Anisa Rowhani-Farid et al.   BMJ Open

Reproducible Research Practices and Transparency across the Biomedical Literature

(2016) Shareen A. Iqbal et al.   PLOS BIOLOGY

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Preferred Reporting Items for a Systematic Review and Meta-analysis of Individual Participant Data

(2015) Lesley A. Stewart et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Utilizing social media data for pharmacovigilance: A review

(2015) Abeed Sarker et al.   JOURNAL OF BIOMEDICAL INFORMATICS

When Data Sharing Gets Close to 100%: What Human Paleogenetics Can Teach the Open Science Movement

(2015) Paolo Anagnostou et al.   PLoS One

Changes in Data Sharing and Data Reuse Practices and Perceptions among Scientists Worldwide

(2015) Carol Tenopir et al.   PLoS One

Research Data in Core Journals in Biology, Chemistry, Mathematics, and Physics

(2015) Ryan P. Womack   PLoS One

The Hartung-Knapp-Sidik-Jonkman method for random effects meta-analysis is straightforward and considerably outperforms the standard DerSimonian-Laird method

(2014) Joanna IntHout et al.   BMC Medical Research Methodology

Data Submission and Quality in Microarray-Based MicroRNA Profiling

(2013) K. W. Witwer   CLINICAL CHEMISTRY

The Availability of Research Data Declines Rapidly with Article Age

(2013) Timothy H. Vines et al.   CURRENT BIOLOGY

Mandated data archiving greatly improves access to research data

(2013) Timothy H. Vines et al.   FASEB JOURNAL

Mine, Yours, Ours? Sharing Data on Human Genetic Variation

(2012) Nicola Milia et al.   PLoS One

Public Availability of Published Research Data in High-Impact Journals

(2011) Alawi A. Alsheikh-Ali et al.   PLoS One

The arcsine is asinine: the analysis of proportions in ecology

(2010) David I. Warton et al.   ECOLOGY

Repeatability of published microarray gene expression analyses

(2009) John P A Ioannidis et al.   NATURE GENETICS

Empirical Study of Data Sharing by Authors Publishing in PLoS Journals

(2009) Caroline J. Savage et al.   PLoS One

Public sharing of research datasets: A pilot study of associations

(2009) Heather A. Piwowar et al.   Journal of Informetrics

Much room for improvement in deposition rates of expression microarray datasets

(2008) Scott A Ochsner et al.   NATURE METHODS