Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

Discordant mitochondrial and nuclear gene phylogenies in emydid turtles: implications for speciation and conservation

(2010) JOHN J. WIENS et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The phylogeny of advanced snakes (Colubroidea), with discovery of a new subfamily and comparison of support methods for likelihood trees

(2010) R. Alexander Pyron et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Combining Phylogenomics and Fossils in Higher-Level Squamate Reptile Phylogeny: Molecular Data Change the Placement of Fossil Taxa

(2010) John J. Wiens et al.   SYSTEMATIC BIOLOGY

CAN PARALLEL DIVERSIFICATION OCCUR IN SYMPATRY? REPEATED PATTERNS OF BODY-SIZE EVOLUTION IN COEXISTING CLADES OF NORTH AMERICAN SALAMANDERS

(2009) Kenneth H. Kozak et al.   EVOLUTION

EVOLUTIONARY AND BIOGEOGRAPHIC ORIGINS OF HIGH TROPICAL DIVERSITY IN OLD WORLD FROGS (RANIDAE)

(2009) John J. Wiens et al.   EVOLUTION

DID EGG-LAYING BOAS BREAK DOLLO'S LAW? PHYLOGENETIC EVIDENCE FOR REVERSAL TO OVIPARITY IN SAND BOAS (ERYX: BOIDAE)

(2009) Vincent J. Lynch et al.   EVOLUTION

A Revised Phylogeny of Holarctic Treefrogs (Genus Hyla) Based on Nuclear and Mitochondrial DNA Sequences

(2009) Xia Hua et al.   HERPETOLOGICA

Phylogenetic relationships of phrynosomatid lizards based on nuclear and mitochondrial data, and a revised phylogeny for Sceloporus

(2009) John J. Wiens et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Paleontology, Genomics, and Combined-Data Phylogenetics: Can Molecular Data Improve Phylogeny Estimation for Fossil Taxa?

(2009) John J. Wiens   SYSTEMATIC BIOLOGY

The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference

(2009) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

Sparse Supermatrices for Phylogenetic Inference: Taxonomy, Alignment, Rogue Taxa, and the Phylogeny of Living Turtles

(2009) Robert C. Thomson et al.   SYSTEMATIC BIOLOGY

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

(2008) Stefanie Hartmann et al.   BMC EVOLUTIONARY BIOLOGY

Branch Lengths, Support, and Congruence: Testing the Phylogenomic Approach with 20 Nuclear Loci in Snakes

(2008) John J. Wiens et al.   SYSTEMATIC BIOLOGY