Analyzing the Evolution and Host Adaptation of the Rabies Virus from the Perspective of Codon Usage Bias

Codon Usage for Genetic Diversity, and Evolutionary Dynamics of Novel Porcine Parvoviruses 2 through 7 (PPV2–PPV7)

(2022) Changzhan Xie et al.   Viruses-Basel

Comprehensive analysis of codon usage patterns of porcine deltacoronavirus and its host adaptability

(2022) Qi Peng et al.   Transboundary and Emerging Diseases

Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination

(2022) Kathryn Campbell et al.   PLoS Pathogens

Deep decoding of codon usage strategies and host adaption preferences of soybean mosaic virus

(2022) Li Jiang et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Genome-wide role of codon usage on transcription and identification of potential regulators

(2021) Fangzhou Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Codon usage bias and environmental adaptation in microbial organisms

(2021) Davide Arella et al.   MOLECULAR GENETICS AND GENOMICS

Base Composition and Host Adaptation of the SARS-CoV-2: Insight From the Codon Usage Perspective

(2021) Ayan Roy et al.   Frontiers in Microbiology

Codon Usage Bias: An Endless Tale

(2021) Andrés Iriarte et al.   JOURNAL OF MOLECULAR EVOLUTION

Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome

(2021) Vidhya Jagannathan et al.   Genes

Codon usage bias

(2021) Sujatha Thankeswaran Parvathy et al.   MOLECULAR BIOLOGY REPORTS

Pirahy virus: Identification of a new and potential emerging arbovirus in South Brazil

(2021) Marcel Kruchelski Tschá et al.   Virus Evolution

Dissimilation of synonymous codon usage bias in virus–host coevolution due to translational selection

(2020) Feng Chen et al.   Nature Ecology & Evolution

Codon Usage Bias Analysis of Bluetongue Virus Causing Livestock Infection

(2020) Xiaoting Yao et al.   Frontiers in Microbiology

SARS-CoV-2 Codon Usage Bias Downregulates Host Expressed Genes With Similar Codon Usage

(2020) Andres Mariano Alonso et al.   Frontiers in Cell and Developmental Biology

Genetic Analysis and Evolutionary Changes of Porcine Circovirus 2

(2019) Wanting He et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

(2019) Dong Zhang et al.   Molecular Ecology Resources

Construction and optimization of Lactobacillus plantarum expression system expressing glycoprotein 5 of porcine reproductive and respiratory syndrome virus

(2019) Maopeng Wang et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Translational Selection for Speed Is Not Sufficient to Explain Variation in Bacterial Codon Usage Bias

(2018) Saurabh Mahajan et al.   Genome Biology and Evolution

The spread and evolution of rabies virus: conquering new frontiers

(2018) Christine R. Fisher et al.   NATURE REVIEWS MICROBIOLOGY

The influence of poverty and rabies knowledge on healthcare seeking behaviors and dog ownership, Cameroon

(2018) Galileu Barbosa Costa et al.   PLoS One

Broad receptor engagement of an emerging global coronavirus may potentiate its diverse cross-species transmissibility

(2018) Wentao Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The global fight to develop antipoverty vaccines in the anti-vaccine era

(2018) Peter J. Hotez   Human Vaccines & Immunotherapeutics

Comprehensive Analysis of Codon Usage on Rabies Virus and Other Lyssaviruses

(2018) Xu Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Codon usage bias in the N gene of rabies virus

(2017) Wanting He et al.   INFECTION GENETICS AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

The impact of poverty on dog ownership and access to canine rabies vaccination: results from a knowledge, attitudes and practices survey, Uganda 2013

(2017) Ryan MacLaren Wallace et al.   Infectious Diseases of Poverty

Rabies

(2017) Anthony R. Fooks et al.   Nature Reviews Disease Primers

Synonymous codon usage pattern in glycoprotein gene of rabies virus

(2016) Sudhir Morla et al.   GENE

Codon usage trend in mitochondrial CYB gene

(2016) Arif Uddin et al.   GENE

Codon Pair Bias Is a Direct Consequence of Dinucleotide Bias

(2016) Dusan Kunec et al.   Cell Reports

Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts

(2016) Cécile Troupin et al.   PLoS Pathogens

Evolution of codon usage in Zika virus genomes is host and vector specific

(2016) Azeem Mehmood Butt et al.   Emerging Microbes & Infections

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

(2015) Patricia P. Chan et al.   NUCLEIC ACIDS RESEARCH

Everything You Always Wanted to Know About Rabies Virus (But Were Afraid to Ask)

(2015) Benjamin M. Davis et al.   Annual Review of Virology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Eliminating canine rabies, the principal source of human infection: What will it take?

(2013) F.-X. Meslin et al.   ANTIVIRAL RESEARCH

Genome-Wide Characterization of Endogenous Retroviruses in the Bat Myotis lucifugus Reveals Recent and Diverse Infections

(2013) X. Zhuo et al.   JOURNAL OF VIROLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Distribution of Synonymous Codon Choice in the Translation Initiation Region of Dengue Virus

(2013) Jian-hua Zhou et al.   PLoS One

Rates of Viral Evolution Are Linked to Host Geography in Bat Rabies

(2012) Daniel G. Streicker et al.   PLoS Pathogens

Host and viral ecology determine bat rabies seasonality and maintenance

(2011) D. B. George et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Effect of Correlated tRNA Abundances on Translation Errors and Evolution of Codon Usage Bias

(2010) Premal Shah et al.   PLoS Genetics

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

CAIcal: A combined set of tools to assess codon usage adaptation

(2008) Pere Puigbò et al.   Biology Direct