Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination

One million coronavirus sequences: popular genome site hits mega milestone

(2021) Amy Maxmen   NATURE

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

(2020) Andrew Rambaut et al.   Nature Microbiology

Using host traits to predict reservoir host species of rabies virus

(2020) Katherine E. L. Worsley-Tonks et al.   PLoS Neglected Tropical Diseases

Origins of the arctic fox variant rabies viruses responsible for recent cases of the disease in southern Ontario

(2019) Susan A. Nadin-Davis et al.   PLoS Neglected Tropical Diseases

Landscape attributes governing local transmission of an endemic zoonosis: Rabies virus in domestic dogs

(2018) Kirstyn Brunker et al.   MOLECULAR ECOLOGY

Characterization of rabies post-exposure prophylaxis in a region of the eastern Amazon, state of Pará, Brazil, between 2000 and 2014

(2018) N. S. De Paula et al.   Zoonoses and Public Health

Defining objective clusters for rabies virus sequences using affinity propagation clustering

(2018) Susanne Fischer et al.   PLoS Neglected Tropical Diseases

GLUE: a flexible software system for virus sequence data

(2018) Joshua B. Singer et al.   BMC BIOINFORMATICS

Transmission dynamics of re-emerging rabies in domestic dogs of rural China

(2018) Huaiyu Tian et al.   PLoS Pathogens

Molecular characterization and phylogenetic relatedness of dog-derived Rabies Viruses circulating in Cameroon between 2010 and 2016

(2017) Serge Alain Sadeuh-Mba et al.   PLoS Neglected Tropical Diseases

Host–pathogen evolutionary signatures reveal dynamics and future invasions of vampire bat rabies

(2016) Daniel G. Streicker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting

(2016) Hervé Bourhy et al.   PLoS Pathogens

Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts

(2016) Cécile Troupin et al.   PLoS Pathogens

Estimating the Global Burden of Endemic Canine Rabies

(2015) Katie Hampson et al.   PLoS Neglected Tropical Diseases

Phylogenetic and epidemiologic evidence of multiyear incubation in human rabies

(2013) Torrey A. Boland et al.   ANNALS OF NEUROLOGY

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Potential for Rabies Control through Dog Vaccination in Wildlife-Abundant Communities of Tanzania

(2012) Meagan C. Fitzpatrick et al.   PLoS Neglected Tropical Diseases

Molecular Inferences Suggest Multiple Host Shifts of Rabies Viruses from Bats to Mesocarnivores in Arizona during 2001–2009

(2012) Ivan V. Kuzmin et al.   PLoS Pathogens

Molecular diversity and evolutionary history of rabies virus strains circulating in the Balkans

(2011) L. M. McElhinney et al.   JOURNAL OF GENERAL VIROLOGY

Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus

(2010) Chiraz Talbi et al.   PLoS Pathogens

Evolutionary history and dynamics of dog rabies virus in western and central Africa

(2009) C. Talbi et al.   JOURNAL OF GENERAL VIROLOGY

Exploring reservoir dynamics: a case study of rabies in the Serengeti ecosystem

(2008) Tiziana Lembo et al.   JOURNAL OF APPLIED ECOLOGY

The origin and phylogeography of dog rabies virus

(2008) H. Bourhy et al.   JOURNAL OF GENERAL VIROLOGY