Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome

Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes

(2021) Julia V. Halo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel canine reference genome resolves genomic architecture and uncovers transcript complexity

(2021) Chao Wang et al.   Communications Biology

Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

(2021) Richard J. Edwards et al.   BMC GENOMICS

Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C

(2020) Matt A Field et al.   GigaScience

Prenatal Treatment of X-Linked Hypohidrotic Ectodermal Dysplasia using Recombinant Ectodysplasin in a Canine Model

(2019) Carol A Margolis et al.   JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS

Independent amylase gene copy number bursts correlate with dietary preferences in mammals

(2019) Petar Pajic et al.   eLife

Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology

(2019) Jocelyn Plassais et al.   Nature Communications

A comprehensive biomedical variant catalogue based on whole genome sequences of 582 dogs and eight wolves

(2019) V. Jagannathan et al.   ANIMAL GENETICS

Fast and accurate long-read assembly with wtdbg2

(2019) Jue Ruan et al.   NATURE METHODS

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication

(2018) Amanda L. Pendleton et al.   BMC BIOLOGY

Accurate detection of complex structural variations using single-molecule sequencing

(2018) Fritz J. Sedlazeck et al.   NATURE METHODS

Tigmint: correcting assembly errors using linked reads from large molecules

(2018) Shaun D. Jackman et al.   BMC BIOINFORMATICS

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Ancient European dog genomes reveal continuity since the Early Neolithic

(2017) Laura R. Botigué et al.   Nature Communications

The golden retriever model of Duchenne muscular dystrophy

(2017) Joe N. Kornegay   Skeletal Muscle

Assembly scaffolding with PE-contaminated mate-pair libraries

(2016) Kristoffer Sahlin et al.   BIOINFORMATICS

Dietary Variation and Evolution of Gene Copy Number among Dog Breeds

(2016) Taylor Reiter et al.   PLoS One

A Pedigree-Based Map of Recombination in the Domestic Dog Genome

(2016) C. L. Campbell et al.   G3-Genes Genomes Genetics

Amy2Bcopy number variation reveals starch diet adaptations in ancient European dogs

(2016) Morgane Ollivier et al.   Royal Society Open Science

The Dfam database of repetitive DNA families

(2015) Robert Hubley et al.   NUCLEIC ACIDS RESEARCH

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Amylase activity is associated withAMY2Bcopy numbers in dog: implications for dog domestication, diet and diabetes

(2014) Maja Arendt et al.   ANIMAL GENETICS

Analysis of structural diversity in wolf-like canids reveals post-domestication variants

(2014) Oscar Ramirez et al.   BMC GENOMICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Genome Sequencing Highlights the Dynamic Early History of Dogs

(2014) Adam H. Freedman et al.   PLoS Genetics

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

(2013) Erik Axelsson et al.   NATURE

The UCSC genome browser and associated tools

(2012) R. M. Kuhn et al.   BRIEFINGS IN BIOINFORMATICS

PNPLA1 mutations cause autosomal recessive congenital ichthyosis in golden retriever dogs and humans

(2012) Anaïs Grall et al.   NATURE GENETICS

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

A Comprehensive Linkage Map of the Dog Genome

(2009) A. K. Wong et al.   GENETICS

Systematic assessment of copy number variant detection via genome-wide SNP genotyping

(2008) Gregory M Cooper et al.   NATURE GENETICS