Integrated single cell transcriptome sequencing analysis reveals species‐specific genes and molecular pathways for pig spermiogenesis

Multiomics Approach to Profiling Sertoli Cell Maturation during Development of the Spermatogonial Stem Cell Niche

(2023) A L Voigt et al.   MOLECULAR HUMAN REPRODUCTION

Morphological and Molecular Bases of Male Infertility: A Closer Look at Sperm Flagellum

(2023) Rute Pereira et al.   Genes

Overview of single‐cell RNA sequencing analysis and its application to spermatogenesis research

(2023) Takahiro Suzuki   Reproductive Medicine and Biology

Coordinated alternation of DNA methylation and alternative splicing of PBRM1 affect bovine sperm structure and motility

(2023) Chunhong Yang et al.   Epigenetics

Research progress on ion channels and their molecular regulatory mechanisms in the human sperm flagellum

(2023) Shengnan Cong et al.   FASEB JOURNAL

Single-Cell Transcriptomic Profiling of the Mouse Testicular Germ Cells Reveals Important Role of Phosphorylated GRTH/DDX25 in Round Spermatid Differentiation and Acrosome Biogenesis during Spermiogenesis

(2023) Raghuveer Kavarthapu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Broad phosphorylation mediated by testis-specific serine/threonine kinases contributes to spermiogenesis and male fertility

(2023) Xuedi Zhang et al.   Nature Communications

Single-cell RNA-seq uncovers dynamic processes orchestrated by RNA-binding protein DDX43 in chromatin remodeling during spermiogenesis

(2023) Huanhuan Tan et al.   Nature Communications

Machine learning and integrative analysis identify the common pathogenesis of azoospermia complicated with COVID-19

(2023) Jiarong He et al.   Frontiers in Immunology

Spermiogenesis alterations in the absence of CTCF revealed by single cell RNA sequencing

(2023) Ulises Torres-Flores et al.   Frontiers in Cell and Developmental Biology

Single‐cell RNA sequencing of the Mongolia sheep testis reveals a conserved and divergent transcriptome landscape of mammalian spermatogenesis

(2022) Yu Tian et al.   FASEB JOURNAL

Single-cell RNA-seq analysis of testicular somatic cell development in pigs

(2022) Lingkai Zhang et al.   Journal of Genetics and Genomics

Comparative Analysis of the Testes from Wild-Type and Alkbh5-Knockout Mice Using Single-Cell RNA Sequencing

(2022) Shihao Hong et al.   G3-Genes Genomes Genetics

Sertoli cell and spermatogonial development in pigs

(2022) Yi Zheng et al.   Journal of Animal Science and Biotechnology

Multiomics analysis of male infertility

(2022) Xiaolong Wu et al.   BIOLOGY OF REPRODUCTION

Metabolic transitions define spermatogonial stem cell maturation

(2022) A L Voigt et al.   HUMAN REPRODUCTION

Single-cell transcriptomics reveals male germ cells and Sertoli cells developmental patterns in dairy goats

(2022) Fa Ren et al.   Frontiers in Cell and Developmental Biology

Decoding the Spermatogenesis Program: New Insights from Transcriptomic Analyses

(2022) Mashiat Rabbani et al.   Annual Review of Genetics

Transcriptomic analysis of testis and epididymis tissues from Banna mini-pig inbred line boars with single-molecule long-read sequencing

(2022) Pei Wang et al.   BIOLOGY OF REPRODUCTION

The molecular evolution of spermatogenesis across mammals

(2022) Florent Murat et al.   NATURE

Targeting APLN/APJ restores blood-testis barrier and improves spermatogenesis in murine and human diabetic models

(2022) Ke Song et al.   Nature Communications

Single-cell RNA sequencing uncovers dynamic roadmap and cell-cell communication during buffalo spermatogenesis

(2022) Liangfeng Huang et al.   iScience

Testis-expressed protein 33 is not essential for spermiogenesis and fertility in mice

(2021) Mengmeng Xia et al.   Molecular Medicine Reports

Single-nucleus chromatin accessibility and transcriptomic characterization of Alzheimer’s disease

(2021) Samuel Morabito et al.   NATURE GENETICS

The combined action of CTCF and its testis-specific paralog BORIS is essential for spermatogenesis

(2021) Samuel Rivero-Hinojosa et al.   Nature Communications

Molecular mechanisms regulating spermatogenesis in vertebrates: Environmental, metabolic, and epigenetic factor effects

(2021) Bárbara Guerra-Carvalho et al.   ANIMAL REPRODUCTION SCIENCE

Integration and gene co-expression network analysis of scRNA-seq transcriptomes reveal heterogeneity and key functional genes in human spermatogenesis

(2021) Najmeh Salehi et al.   Scientific Reports

Single-cell RNA-sequencing reveals the dynamic process and novel markers in porcine spermatogenesis

(2021) Lingkai Zhang et al.   Journal of Animal Science and Biotechnology

The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty

(2020) Jingtao Guo et al.   Cell Stem Cell

The nf-core framework for community-curated bioinformatics pipelines

(2020) Philip A. Ewels et al.   NATURE BIOTECHNOLOGY

Developmental underpinnings of spermatogonial stem cell establishment

(2020) Nathan C. Law et al.   Andrology

Single-Cell RNA Sequencing of Human, Macaque, and Mouse Testes Uncovers Conserved and Divergent Features of Mammalian Spermatogenesis

(2020) Adrienne Niederriter Shami et al.   DEVELOPMENTAL CELL

Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis

(2020) Xianzhong Lau et al.   DEVELOPMENTAL CELL

Characterization of sheep spermatogenesis through single‐cell RNA sequencing

(2020) Hua Yang et al.   FASEB JOURNAL

Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing

(2019) Kathryn J. Grive et al.   PLoS Genetics

The Neonatal and Adult Human Testis Defined at the Single-Cell Level

(2019) Abhishek Sohni et al.   Cell Reports

Review: Spermatogenesis in the bull

(2018) C. Staub et al.   Animal

G protein-coupled estrogen receptor (GPER) in adult boar testes, epididymis and spermatozoa during epididymal maturation

(2018) Romana Krejčířová et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis

(2018) Mei Wang et al.   Cell Stem Cell

A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq

(2018) Christopher Daniel Green et al.   DEVELOPMENTAL CELL

The adult human testis transcriptional cell atlas

(2018) Jingtao Guo et al.   CELL RESEARCH

The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids

(2018) Brian P. Hermann et al.   Cell Reports

The testicular transcriptome associated with spermatogonia differentiation initiated by gonadotrophin stimulation in the juvenile rhesus monkey (Macaca mulatta)

(2017) Suresh Ramaswamy et al.   HUMAN REPRODUCTION

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Spermatogenesis in humans and its affecting factors

(2016) Filipe Tenorio Lira Neto et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

Expression pattern of estrogen receptors α and β and G-protein-coupled estrogen receptor 1 in the human testis

(2014) Daniela Fietz et al.   HISTOCHEMISTRY AND CELL BIOLOGY

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Gper and ESRs are expressed in rat round spermatids and mediate oestrogen-dependent rapid pathways modulating expression of cyclin B1 and Bax

(2010) A. Chimento et al.   INTERNATIONAL JOURNAL OF ANDROLOGY

17β-Estradiol activates rapid signaling pathways involved in rat pachytene spermatocytes apoptosis through GPR30 and ERα

(2010) Adele Chimento et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

The biology of spermatogenesis: the past, present and future

(2010) C. Y. Cheng et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Regulation of Spermatogonial Stem Cell Self-Renewal in Mammals

(2008) Jon M. Oatley et al.   Annual Review of Cell and Developmental Biology

The Novel Estrogen Receptor, G Protein-Coupled Receptor 30, Mediates the Proliferative Effects Induced by 17β-Estradiol on Mouse Spermatogonial GC-1 Cell Line

(2008) Rosa Sirianni et al.   ENDOCRINOLOGY