Genomics of predictive radiation mutagenesis in oilseed rape: modifying seed oil composition

Long-read assembly of the Brassica napus reference genome Darmor-bzh

(2020) Mathieu Rousseau-Gueutin et al.   GigaScience

The impact of reducing fatty acid desaturation on the composition and thermal stability of rapeseed oil

(2019) Harjeevan Kaur et al.   PLANT BIOTECHNOLOGY JOURNAL

The future of CRISPR technologies in agriculture

(2018) Caixia Gao   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A technological and regulatory outlook on CRISPR crop editing

(2017) Rea Globus et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Below-Background Ionizing Radiation as an Environmental Cue for Bacteria

(2017) Hugo Castillo et al.   Frontiers in Microbiology

Frequency and type of inheritable mutations induced by γ rays in rice as revealed by whole genome sequencing

(2016) Shan Li et al.   Journal of Zhejiang University-SCIENCE B

Extensive homoeologous genome exchanges in allopolyploid crops revealed by mRNAseq-based visualization

(2016) Zhesi He et al.   PLANT BIOTECHNOLOGY JOURNAL

Advancing Crop Transformation in the Era of Genome Editing

(2016) Fredy Altpeter et al.   PLANT CELL

Fast neutron-induced structural rearrangements at a soybean NAP1 locus result in gnarled trichomes

(2016) Benjamin W. Campbell et al.   THEORETICAL AND APPLIED GENETICS

Establishing a CRISPR–Cas-like immune system conferring DNA virus resistance in plants

(2015) Xiang Ji et al.   Nature Plants

Conferring resistance to geminiviruses with the CRISPR–Cas prokaryotic immune system

(2015) Nicholas J. Baltes et al.   Nature Plants

Genome Resilience and Prevalence of Segmental Duplications Following Fast Neutron Irradiation of Soybean

(2014) Y.-T. Bolon et al.   GENETICS

Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew

(2014) Yanpeng Wang et al.   NATURE BIOTECHNOLOGY

Copy number variants are produced in response to low-dose ionizing radiation in cultured cells

(2013) Martin F. Arlt et al.   ENVIRONMENTAL AND MOLECULAR MUTAGENESIS

The control of seed oil polyunsaturate content in the polyploid crop species Brassica napus

(2013) Rachel Wells et al.   MOLECULAR BREEDING

Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation

(2013) Maura Costello et al.   NUCLEIC ACIDS RESEARCH

Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus

(2012) Janet Higgins et al.   BMC GENOMICS

Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana

(2012) E. J. Belfield et al.   GENOME RESEARCH

Associative transcriptomics of traits in the polyploid crop species Brassica napus

(2012) Andrea L Harper et al.   NATURE BIOTECHNOLOGY

TILLINGin extremis

(2012) Trevor L. Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Two high linolenic mutants of Arabidopsis thaliana contain megabase-scale genome duplications encompassing the FAD3 locus

(2011) Carmel M. O’Neill et al.   PLANT JOURNAL

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Detection of genomic deletions in rice using oligonucleotide microarrays

(2009) Myron Bruce et al.   BMC GENOMICS

Comparative Analysis between Homoeologous Genome Segments of Brassica napus and Its Progenitor Species Reveals Extensive Sequence-Level Divergence

(2009) F. Cheung et al.   PLANT CELL

Deletion-Based Reverse Genetics in Medicago truncatula

(2009) C. Rogers et al.   PLANT PHYSIOLOGY

High-Throughput Detection of Induced Mutations and Natural Variation Using KeyPoint™ Technology

(2009) Diana Rigola et al.   PLoS One

Characterization of hemizygous deletions in Citrus using array-Comparative Genomic Hybridization and microsynteny comparisons with the poplar genome

(2008) Gabino Ríos et al.   BMC GENOMICS