Fast neutron-induced structural rearrangements at a soybean NAP1 locus result in gnarled trichomes

Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01

(2016) Qijian Song et al.   BMC GENOMICS

Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq

(2015) Eudald Illa-Berenguer et al.   THEORETICAL AND APPLIED GENETICS

Fingerprinting Soybean Germplasm and Its Utility in Genomic Research

(2015) Qijian Song et al.   G3-Genes Genomes Genetics

Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis

(2015) Nicholas J. Haase et al.   G3-Genes Genomes Genetics

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

An RNA-Seq based gene expression atlas of the common bean

(2014) Jamie A O’Rourke et al.   BMC GENOMICS

Deletions of the SACPD-C locus elevate seed stearic acid levels but also result in fatty acid and morphological alterations in nitrogen fixing nodules

(2014) Jason D Gillman et al.   BMC PLANT BIOLOGY

Genome Resilience and Prevalence of Segmental Duplications Following Fast Neutron Irradiation of Soybean

(2014) Y.-T. Bolon et al.   GENETICS

Correction: Klotho Suppresses Cardiomyocyte Apoptosis in Mice with Stress-Induced Cardiac Injury via Downregulation of Endoplasmic Reticulum Stress

(2014) Shuang Song et al.   PLoS One

Biparental Resequencing Coupled With SNP Genotyping of a Segregating Population Offers Insights Into the Landscape of Recombination and Fixed Genomic Regions in Elite Soybean

(2014) Ying-hui Li et al.   G3-Genes Genomes Genetics

A Roadmap for Functional Structural Variants in the Soybean Genome

(2014) Justin E. Anderson et al.   G3-Genes Genomes Genetics

Mapping-by-sequencing accelerates forward genetics in barley

(2014) Martin Mascher et al.   GENOME BIOLOGY

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Mapping of Quantitative Trait Loci Underlying Cold Tolerance in Rice Seedlings via High-Throughput Sequencing of Pooled Extremes

(2013) Zemao Yang et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

A candidate male-fertility female-fertility gene tagged by the soybean endogenous transposon, Tgm9

(2012) Jaydeep Raval et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana

(2012) E. J. Belfield et al.   GENOME RESEARCH

The responses of trichome mutants to enhanced ultraviolet-B radiation in Arabidopsis thaliana

(2012) An Yan et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes

(2012) L. K. McHale et al.   PLANT PHYSIOLOGY

Identification of Candidate Genes Underlying an Iron Efficiency Quantitative Trait Locus in Soybean

(2012) G. A. Peiffer et al.   PLANT PHYSIOLOGY

Tnt1 Retrotransposon Mutagenesis: A Tool for Soybean Functional Genomics

(2012) Y. Cui et al.   PLANT PHYSIOLOGY

Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq)

(2012) Sanzhen Liu et al.   PLoS One

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The Rice Miniature Inverted Repeat Transposable Element mPing Is an Effective Insertional Mutagen in Soybean

(2011) C. N. Hancock et al.   PLANT PHYSIOLOGY

Phenotypic and Genomic Analyses of a Fast Neutron Mutant Population Resource in Soybean

(2011) Y.-T. Bolon et al.   PLANT PHYSIOLOGY

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

The Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82

(2010) W. J. Haun et al.   PLANT PHYSIOLOGY

Studies of a Biochemical Factory: Tomato Trichome Deep Expressed Sequence Tag Sequencing and Proteomics

(2010) A. L. Schilmiller et al.   PLANT PHYSIOLOGY

An Integrative Approach to Genomic Introgression Mapping

(2010) Andrew J. Severin et al.   PLANT PHYSIOLOGY

Rice Snl6, a Cinnamoyl-CoA Reductase-Like Gene Family Member, Is Required for NH1-Mediated Immunity to Xanthomonas oryzae pv. oryzae

(2010) Rebecca S. Bart et al.   PLoS Genetics

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Map-Based Cloning of the Gene Associated With the Soybean Maturity Locus E3

(2009) Satoshi Watanabe et al.   GENETICS

Transcriptome Analysis of Arabidopsis Wild-Type and gl3–sst sim Trichomes Identifies Four Additional Genes Required for Trichome Development

(2009) M. David Marks et al.   Molecular Plant

Characterization of hemizygous deletions in Citrus using array-Comparative Genomic Hybridization and microsynteny comparisons with the poplar genome

(2008) Gabino Ríos et al.   BMC GENOMICS

TILLING to detect induced mutations in soybean

(2008) Jennifer L Cooper et al.   BMC PLANT BIOLOGY

Allelism and molecular mapping of soybean necrotic root mutants

(2008) Reid G. Palmer et al.   GENOME

Establishment of a soybean (Glycine max Merr. L) transposon-based mutagenesis repository

(2008) Melanie Mathieu et al.   PLANTA

Molecular mapping of 36 soybean male-sterile, female-sterile mutants

(2008) R. G. Palmer et al.   THEORETICAL AND APPLIED GENETICS