Integrative transcriptome and whole‐genome bisulfite sequencing analyses of a temperature‐sensitive albino tea plant cultivar

Shading-Dependent Greening Process of the Leaves in the Light-Sensitive Albino Tea Plant ‘Huangjinya’: Possible Involvement of the Light-Harvesting Complex II Subunit of Photosystem II in the Phenotypic Characteristic

(2023) Ying-Qi Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Whole-Transcriptome Sequencing Reveals a ceRNA Regulatory Network Associated with the Process of Periodic Albinism under Low Temperature in Baiye No. 1 (Camellia sinensis)

(2023) Cunbin Xu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

DNA Methylation in Plant Responses and Adaption to Abiotic Stresses

(2022) Minghui Sun et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

DNA methylation dynamics in response to abiotic and pathogen stress in plants

(2022) Heena Arora et al.   PLANT CELL REPORTS

Characterizing the cultivar-specific mechanisms underlying the accumulation of quality-related metabolites in specific Chinese tea (Camellia sinensis) germplasms to diversify tea products

(2022) Jianlong Li et al.   FOOD RESEARCH INTERNATIONAL

Factor of DNA methylation 1 affects woodland strawberry plant stature and organ size via DNA methylation

(2022) Guanghui Zheng et al.   PLANT PHYSIOLOGY

A Transcriptomic Analysis of Tobacco Leaf with the Functional Loss of the Plastid rpoB Operon Caused by TALEN-Mediated Double-Strand Breakage

(2022) Yu-Chang Liu et al.   Plants-Basel

Metabolic and Transcriptomic Profiling Reveals Etiolated Mechanism in Huangyu Tea (Camellia sinensis) Leaves

(2022) Xin Mei et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Arabidopsis CHLOROPHYLLASE 1 protects young leaves from long-term photodamage by facilitating FtsH-mediated D1 degradation in photosystem II repair

(2021) Ya-nan Tian et al.   Molecular Plant

Divergent DNA methylation contributes to duplicated gene evolution and chilling response in tea plants

(2021) Wei Tong et al.   PLANT JOURNAL

Identification, methylation profiling, and expression analysis of stress-responsive cytochrome P450 genes in rice under abiotic and phytohormones stresses

(2021) Muhammad Waseem et al.   GM Crops & Food-Biotechnology in Agriculture and the Food Chain

DNA methyltransferase CHROMOMETHYLASE3 prevents ONSEN transposon silencing under heat stress

(2021) Kosuke Nozawa et al.   PLoS Genetics

Transcriptomic analyses reveal variegation-induced metabolic changes leading to high L-theanine levels in albino sectors of variegated tea (Camellia sinensis)

(2021) Nianci Xie et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Shading Effects on Leaf Color Conversion and Biosynthesis of the Major Secondary Metabolites in the Albino Tea Cultivar “Yujinxiang”

(2020) Ping Xu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Plastid ribosomal protein LPE2 is involved in photosynthesis and the response to C/N balance in Arabidopsis thaliana

(2020) Xiaoxiao Dong et al.   Journal of Integrative Plant Biology

Transcriptomic analysis reveals mechanism of light-sensitive albinism in tea plant Camellia sinensis ‘Huangjinju’

(2020) Xinfeng Jiang et al.   BMC PLANT BIOLOGY

GREEN STRIPE , encoding methylated TOMATO AGAMOUS‐LIKE 1, regulates chloroplast development and chlorophyll synthesis in fruit

(2020) Genzhong Liu et al.   NEW PHYTOLOGIST

Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice

(2020) Weifeng Huang et al.   NEW PHYTOLOGIST

Fine mapping of a candidate gene for cool-temperature-induced albinism in ornamental kale

(2020) Chenghuan Yan et al.   BMC PLANT BIOLOGY

Population sequencing enhances understanding of tea plant evolution

(2020) Xinchao Wang et al.   Nature Communications

A Role for Epigenetic Regulation in the Adaptation and Stress Responses of Non-model Plants

(2019) Flávia Thiebaut et al.   Frontiers in Plant Science

Analysis of Young Shoots of ‘Anji Baicha’ (Camellia sinensis ) at Three Developmental Stages Using Nontargeted LC-MS-Based Metabolomics

(2019) Chaozhen Zeng et al.   JOURNAL OF FOOD SCIENCE

Effects of light intensity on metabolism of light-harvesting pigment and photosynthetic system in Camellia sinensis L. cultivar ‘Huangjinya’

(2019) Fan Yangen et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Dissection of Chemical Composition and Associated Gene Expression in the Pigment-Deficient Tea Cultivar ‘Xiaoxueya’ Reveals an Albino Phenotype and Metabolite Formation

(2019) Na-Na Li et al.   Frontiers in Plant Science

Dynamics and function of DNA methylation in plants

(2018) Huiming Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Gene mapping and transcriptome profiling of a practical photo-thermo-sensitive rice male sterile line with seedling-specific green-revertible albino leaf

(2018) Xin Li et al.   PLANT SCIENCE

Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’

(2018) Qingping Ma et al.   Horticulture Research

Differential Accumulation of Aroma Compounds in Normal Green and Albino-Induced Yellow Tea (Camellia sinensis) Leaves

(2018) Fang Dong et al.   MOLECULES

The association of changes in DNA methylation with temperature-dependent sex determination in cucumber

(2017) Yun-Song Lai et al.   JOURNAL OF EXPERIMENTAL BOTANY

An epiallele of riceAK1affects photosynthetic capacity

(2017) Xiangjin Wei et al.   Journal of Integrative Plant Biology

Identification of STN7/STN8 kinase targets reveals connections between electron transport, metabolism and gene expression

(2017) Anna Schönberg et al.   PLANT JOURNAL

Biochemical and transcriptomic analyses reveal different metabolite biosynthesis profiles among three color and developmental stages in ‘Anji Baicha’ (Camellia sinensis)

(2016) Chun-Fang Li et al.   BMC PLANT BIOLOGY

Physiological differences and changes in global DNA methylation levels in Agave angustifolia Haw. albino variant somaclones during the micropropagation process

(2016) Fátima Duarte-Aké et al.   PLANT CELL REPORTS

Methyl-CpG-Binding Domain Protein MBD7 Is Required for Active DNA Demethylation in Arabidopsis

(2015) Chunlei Wang et al.   PLANT PHYSIOLOGY

Biochemical and transcriptome analyses of a novel chlorophyll-deficient chlorina tea plant cultivar

(2014) Lu Wang et al.   BMC PLANT BIOLOGY

The Ability to Form Homodimers Is Essential for RDM1 to Function in RNA-Directed DNA Methylation

(2014) Taku Sasaki et al.   PLoS One

Natural CMT2 Variation Is Associated With Genome-Wide Methylation Changes and Temperature Seasonality

(2014) Xia Shen et al.   PLoS Genetics

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

(2013) Julie A. Law et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

PSBP-DOMAIN PROTEIN1, a Nuclear-Encoded Thylakoid Lumenal Protein, Is Essential for Photosystem I Assembly in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis

(2012) I. Ausin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Two Proteins Homologous to PsbQ are Novel Subunits of the Chloroplast NAD(P)H Dehydrogenase

(2010) M. Suorsa et al.   PLANT AND CELL PHYSIOLOGY

An Arabidopsis Pentatricopeptide Repeat Protein, SUPPRESSOR OF VARIEGATION7, Is Required for FtsH-Mediated Chloroplast Biogenesis

(2010) X. Liu et al.   PLANT PHYSIOLOGY

The De Novo Cytosine Methyltransferase DRM2 Requires Intact UBA Domains and a Catalytically Mutated Paralog DRM3 during RNA–Directed DNA Methylation in Arabidopsis thaliana

(2010) Ian R. Henderson et al.   PLoS Genetics

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Auxin Responses in Mutants of the Arabidopsis CONSTITUTIVE PHOTOMORPHOGENIC9 Signalosome

(2008) E. M. N. Dohmann et al.   PLANT PHYSIOLOGY