Whole-Transcriptome Sequencing Reveals a ceRNA Regulatory Network Associated with the Process of Periodic Albinism under Low Temperature in Baiye No. 1 (Camellia sinensis)

Identification of Competing Endogenous RNAs (ceRNAs) Network Associated with Drought Tolerance in Medicago truncatula with Rhizobium Symbiosis

(2022) Jiaxian Jing et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Relationship between Secondary Metabolism and miRNA for Important Flavor Compounds in Different Tissues of Tea Plant (Camellia sinensis) As Revealed by Genome-Wide miRNA Analysis

(2021) Hui Li et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

miR159 represses a constitutive pathogen defense response in tobacco

(2020) Zihui Zheng et al.   PLANT PHYSIOLOGY

Identification and characterization of circular RNAs during wood formation of poplars in acclimation to low nitrogen availability

(2020) Huimin Liu et al.   PLANTA

An apple MYB transcription factor regulates cold tolerance and anthocyanin accumulation and undergoes MIEL1‐mediated degradation

(2019) Jian‐Ping An et al.   PLANT BIOTECHNOLOGY JOURNAL

Biology and Function of miR159 in Plants

(2019) Anthony A. Millar et al.   Plants-Basel

Identification of the sirohaem biosynthesis pathway in Staphylococcus aureus

(2019) Marco A. M. Videira et al.   FEBS Journal

Dissection of Chemical Composition and Associated Gene Expression in the Pigment-Deficient Tea Cultivar ‘Xiaoxueya’ Reveals an Albino Phenotype and Metabolite Formation

(2019) Na-Na Li et al.   Frontiers in Plant Science

Multi-omics research in albino tea plants: Past, present, and future

(2019) Chenyu Zhang et al.   SCIENTIA HORTICULTURAE

OUP accepted manuscript

(2018)   BIOINFORMATICS

Noncoding RNA:RNA Regulatory Networks in Cancer

(2018) Jia Chan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Draft genome sequence ofCamellia sinensisvar.sinensisprovides insights into the evolution of the tea genome and tea quality

(2018) Chaoling Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Significantly increased amino acid accumulation in a novel albino branch of the tea plant (Camellia sinensis)

(2018) Mengqian Lu et al.   PLANTA

Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’

(2018) Qingping Ma et al.   Horticulture Research

iTRAQ-Based Quantitative Proteomics Analysis Reveals the Mechanism Underlying the Weakening of Carbon Metabolism in Chlorotic Tea Leaves

(2018) Fang Dong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22

(2017) Sonia Balyan et al.   Scientific Reports

Proteome and Acetyl-Proteome Profiling of Camellia sinensis cv. ‘Anji Baicha’ during Periodic Albinism Reveals Alterations in Photosynthetic and Secondary Metabolite Biosynthetic Pathways

(2017) Yan-Xia Xu et al.   Frontiers in Plant Science

Molecular Link between Leaf Coloration and Gene Expression of Flavonoid and Carotenoid Biosynthesis in Camellia sinensis Cultivar ‘Huangjinya’

(2017) Lubin Song et al.   Frontiers in Plant Science

Metabolic Flux Redirection and Transcriptomic Reprogramming in the Albino Tea Cultivar ‘Yu-Jin-Xiang’ with an Emphasis on Catechin Production

(2017) Guo-Feng Liu et al.   Scientific Reports

Quantitative Succinyl-Proteome Profiling of Camellia sinensis cv. ‘Anji Baicha’ During Periodic Albinism

(2017) Yan-Xia Xu et al.   Scientific Reports

Ubiquitous miR159 repression of MYB33/65 in Arabidopsis rosettes is robust and is not perturbed by a wide range of stresses

(2016) Yanjiao Li et al.   BMC PLANT BIOLOGY

Biochemical and transcriptomic analyses reveal different metabolite biosynthesis profiles among three color and developmental stages in ‘Anji Baicha’ (Camellia sinensis)

(2016) Chun-Fang Li et al.   BMC PLANT BIOLOGY

Isolation and dynamic expression of four genes involving in shikimic acid pathway in Camellia sinensis ‘Baicha 1’ during periodic albinism

(2016) Xu-Jun Zhu et al.   MOLECULAR BIOLOGY REPORTS

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Endogenous microRNA sponges: evidence and controversy

(2016) Daniel W. Thomson et al.   NATURE REVIEWS GENETICS

PceRBase: a database of plant competing endogenous RNA

(2016) Chunhui Yuan et al.   NUCLEIC ACIDS RESEARCH

Effect of temperature on accumulation of chlorophylls and leaf ultrastructure of low temperature induced albino tea plant

(2016) Du et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Effect of temperature on the expression of genes related to the accumulation of chlorophylls and carotenoids in albino tea

(2016) Y. Y. Du et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Comparative profiling of gene expression in Camellia sinensis L. cultivar AnJiBaiCha leaves during periodic albinism

(2015) Ling Yuan et al.   GENE

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Altered levels of LIL3 isoforms inArabidopsislead to disturbed pigment-protein assembly and chlorophyll synthesis, chlorotic phenotype and impaired photosynthetic performance

(2015) Jens N. Lohscheider et al.   PLANT CELL AND ENVIRONMENT

Competing endogenous RNA interplay in cancer: mechanism, methodology, and perspectives

(2015) Dong-Liang Cheng et al.   TUMOR BIOLOGY

Identification and characterization of cold-responsive microRNAs in tea plant (Camellia sinensis) and their targets using high-throughput sequencing and degradome analysis

(2014) Yue Zhang et al.   BMC PLANT BIOLOGY

Transcriptome-Wide Characterization of Novel and Heat-Stress-Responsive microRNAs in Radish (Raphanus Sativus L.) Using Next-Generation Sequencing

(2014) Ronghua Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Competing Endogenous RNA: The Key to Posttranscriptional Regulation

(2014) Rituparno Sen et al.   TheScientificWorldJOURNAL

Functional Analysis of Light-harvesting-like Protein 3 (LIL3) and Its Light-harvesting Chlorophyll-binding Motif inArabidopsis

(2013) Kaori Takahashi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Circular RNAs are a large class of animal RNAs with regulatory potency

(2013) Sebastian Memczak et al.   NATURE

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Dynamic changes in catechin levels and catechin biosynthesis-related gene expression in albino tea plants (Camellia sinensis L.)

(2013) Ligui Xiong et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Psb28 is involved in recovery of photosystem II at high temperature in Synechocystis sp. PCC 6803

(2012) Shinya Sakata et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Genome wide identification of chilling responsive microRNAs in Prunus persica

(2012) Abdelali Barakat et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential expression analysis of different albescent stages of ‘Anji Baicha’ (Camellia sinensis (L.) O. Kuntze) using cDNA microarray

(2012) Chun-Lei Ma et al.   SCIENTIA HORTICULTURAE

Regulation of miR319 during cold stress in sugarcane

(2011) FLÁVIA THIEBAUT et al.   PLANT CELL AND ENVIRONMENT

Proteomic analysis of young leaves at three developmental stages in an albino tea cultivar

(2011) Qin Li et al.   Proteome Science

Recent advances in understanding the assembly and repair of photosystem II

(2010) Peter J. Nixon et al.   ANNALS OF BOTANY

Interaction of the pentatricopeptide-repeat protein DELAYED GREENING 1 with sigma factor SIG6 in the regulation of chloroplast gene expression in Arabidopsis cotyledons

(2010) Wei Chi et al.   PLANT JOURNAL

LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis

(2010) R. Tanaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

RNAplex: a fast tool for RNA–RNA interaction search

(2008) Hakim Tafer et al.   BIOINFORMATICS

The Pentratricopeptide Repeat Protein DELAYED GREENING1 Is Involved in the Regulation of Early Chloroplast Development and Chloroplast Gene Expression in Arabidopsis

(2008) W. Chi et al.   PLANT PHYSIOLOGY

Psb28 Protein Is Involved in the Biogenesis of the Photosystem II Inner Antenna CP47 (PsbB) in the Cyanobacterium Synechocystis sp. PCC 6803

(2008) M. Dobakova et al.   PLANT PHYSIOLOGY