Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

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An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing

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Recognition of Multivalent Histone States Associated with Heterochromatin by UHRF1 Protein

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SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV

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Features and development ofCoot

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BS Seeker: precise mapping for bisulfite sequencing

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A Protein Complex Required for Polymerase V Transcripts and RNA- Directed DNA Methylation in Arabidopsis

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Establishing, maintaining and modifying DNA methylation patterns in plants and animals

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Dali server: conservation mapping in 3D

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BayesPeak: Bayesian analysis of ChIP-seq data

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A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes

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Linking DNA methylation and histone modification: patterns and paradigms

(2009) Howard Cedar et al.   NATURE REVIEWS GENETICS

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

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Characterization of Unique Small RNA Populations from Rice Grain

(2008) Sara E. Heisel et al.   PLoS One

Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

(2008) Yana V. Bernatavichute et al.   PLoS One

PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

(2008) R. A. Mosher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SRA-Domain Proteins Required for DRM2-Mediated De Novo DNA Methylation

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