Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogenPseudomonas syringae

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The Extent of Genome Flux and Its Role in the Differentiation of Bacterial Lineages

(2014) Reuben W. Nowell et al.   Genome Biology and Evolution

A framework to gauge the epidemic potential of plant pathogens in environmental reservoirs: the example of kiwifruit canker

(2014) Claudia Bartoli et al.   MOLECULAR PLANT PATHOLOGY

A User's Guide to a Data Base of the Diversity of Pseudomonas syringae and Its Application to Classifying Strains in This Phylogenetic Complex

(2014) Odile Berge et al.   PLoS One

Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the Pseudomonas syringae Phylogeny

(2014) Tatiana S. Mucyn et al.   PLoS Pathogens

Soil water flow is a source of the plant pathogenPseudomonas syringaein subalpine headwaters

(2013) Caroline L. Monteil et al.   ENVIRONMENTAL MICROBIOLOGY

Incongruence between multi-locus sequence analysis (MLSA) and whole-genome-based phylogenies:Pseudomonas syringaepathovarpisias a cautionary tale

(2013) David A. Baltrus et al.   MOLECULAR PLANT PATHOLOGY

Nonagricultural reservoirs contribute to emergence and evolution ofPseudomonas syringaecrop pathogens

(2013) Caroline L. Monteil et al.   NEW PHYTOLOGIST

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

A Genomic Redefinition of Pseudomonas avellanae species

(2013) Marco Scortichini et al.   PLoS One

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

(2013) S. K. Sheppard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

(2013) Martin F. Polz et al.   TRENDS IN GENETICS

T3DB: an integrated database for bacterial type III secretion system

(2012) Yejun Wang et al.   BMC BIOINFORMATICS

Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut

(2012) Heath E O’Brien et al.   BMC MICROBIOLOGY

Genome Sequence of the Plant Pathogen Pseudomonas syringae pv. panici LMG 2367

(2012) H. Liu et al.   JOURNAL OF BACTERIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Top 10 plant pathogenic bacteria in molecular plant pathology

(2012) JOHN MANSFIELD et al.   MOLECULAR PLANT PATHOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Pseudomonas syringae pv. actinidiae (PSA) Isolates from Recent Bacterial Canker of Kiwifruit Outbreaks Belong to the Same Genetic Lineage

(2012) Angelo Mazzaglia et al.   PLoS One

Next-generation genomics of Pseudomonas syringae

(2011) Heath E. O’Brien et al.   CURRENT OPINION IN MICROBIOLOGY

Emigration of the plant pathogen Pseudomonas syringae from leaf litter contributes to its population dynamics in alpine snowpack

(2011) Caroline L. Monteil et al.   ENVIRONMENTAL MICROBIOLOGY

Inference of Gain and Loss Events from Phyletic Patterns Using Stochastic Mapping and Maximum Parsimony—A Simulation Study

(2011) Ofir Cohen et al.   Genome Biology and Evolution

Genome Sequence Analyses of Pseudomonas savastanoi pv. glycinea and Subtractive Hybridization-Based Comparative Genomics with Nine Pseudomonads

(2011) Mingsheng Qi et al.   PLoS One

ConDeTri - A Content Dependent Read Trimmer for Illumina Data

(2011) Linnéa Smeds et al.   PLoS One

Pseudomonas syringae pv. actinidiae Draft Genomes Comparison Reveal Strain-Specific Features Involved in Adaptation and Virulence to Actinidia Species

(2011) Simone Marcelletti et al.   PLoS One

The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity

(2011) Rongman Cai et al.   PLoS Pathogens

Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates

(2011) David A. Baltrus et al.   PLoS Pathogens

GLOOME: gain loss mapping engine

(2010) O. Cohen et al.   BIOINFORMATICS

Pseudomonas syringaeStrains Naturally Lacking the ClassicalP. syringae hrp/hrcLocus Are Common Leaf Colonizers Equipped with an Atypical Type III Secretion System

(2010) Christopher R. Clarke et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Comparative Genome Analysis Provides Insights into the Evolution and Adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum

(2010) Sarah Green et al.   PLoS One

Pseudomonas cannabina pv. cannabina pv. nov., and Pseudomonas cannabina pv. alisalensis (Cintas Koike and Bull, 2000) comb. nov., are members of the emended species Pseudomonas cannabina (ex Šutič & Dowson 1959) Gardan, Shafik, Belouin, Brosch, Grimont & Grimont 1999

(2010) Carolee T. Bull et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

TagDust--a program to eliminate artifacts from next generation sequencing data

(2009) T. Lassmann et al.   BIOINFORMATICS

A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528

(2009) David J Studholme et al.   BMC GENOMICS

Endopathogenic lifestyle ofPseudomonas savastanoipv.savastanoiin olive knots

(2009) Luis Rodríguez-Moreno et al.   Microbial Biotechnology

Expanding the Paradigms of Plant Pathogen Life History and Evolution of Parasitic Fitness beyond Agricultural Boundaries

(2009) Cindy E. Morris et al.   PLoS Pathogens

Comparing the xylose reductase/xylitol dehydrogenase and xylose isomerase pathways in arabinose and xylose fermenting Saccharomyces cerevisiae strains

(2008) Maurizio Bettiga et al.   Biotechnology for Biofuels

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Integrating Markov Clustering and Molecular Phylogenetics to Reconstruct the Cyanobacterial Species Tree from Conserved Protein Families

(2008) W. D. Swingley et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Draft Genome Sequence ofPseudomonas syringaepv.tomatoT1 Reveals a Type III Effector Repertoire Significantly Divergent from That ofPseudomonas syringaepv.tomatoDC3000

(2008) Nalvo F. Almeida et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A likelihood framework to analyse phyletic patterns

(2008) O. Cohen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Isolation and identification of Pseudomonas syringae pv. aesculi causing bleeding canker of horse chestnut in the UK

(2008) J. F. Webber et al.   PLANT PATHOLOGY