Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogenPseudomonas syringae
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogenPseudomonas syringae
Authors
Keywords
-
Journal
MOLECULAR PLANT PATHOLOGY
Volume 17, Issue 9, Pages 1409-1424
Publisher
Wiley
Online
2016-05-05
DOI
10.1111/mpp.12423
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- The Extent of Genome Flux and Its Role in the Differentiation of Bacterial Lineages
- (2014) Reuben W. Nowell et al. Genome Biology and Evolution
- A framework to gauge the epidemic potential of plant pathogens in environmental reservoirs: the example of kiwifruit canker
- (2014) Claudia Bartoli et al. MOLECULAR PLANT PATHOLOGY
- A User's Guide to a Data Base of the Diversity of Pseudomonas syringae and Its Application to Classifying Strains in This Phylogenetic Complex
- (2014) Odile Berge et al. PLoS One
- Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the Pseudomonas syringae Phylogeny
- (2014) Tatiana S. Mucyn et al. PLoS Pathogens
- Soil water flow is a source of the plant pathogenPseudomonas syringaein subalpine headwaters
- (2013) Caroline L. Monteil et al. ENVIRONMENTAL MICROBIOLOGY
- Incongruence between multi-locus sequence analysis (MLSA) and whole-genome-based phylogenies:Pseudomonas syringaepathovarpisias a cautionary tale
- (2013) David A. Baltrus et al. MOLECULAR PLANT PATHOLOGY
- Nonagricultural reservoirs contribute to emergence and evolution ofPseudomonas syringaecrop pathogens
- (2013) Caroline L. Monteil et al. NEW PHYTOLOGIST
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- A Genomic Redefinition of Pseudomonas avellanae species
- (2013) Marco Scortichini et al. PLoS One
- Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter
- (2013) S. K. Sheppard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Horizontal gene transfer and the evolution of bacterial and archaeal population structure
- (2013) Martin F. Polz et al. TRENDS IN GENETICS
- T3DB: an integrated database for bacterial type III secretion system
- (2012) Yejun Wang et al. BMC BIOINFORMATICS
- Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut
- (2012) Heath E O’Brien et al. BMC MICROBIOLOGY
- Genome Sequence of the Plant Pathogen Pseudomonas syringae pv. panici LMG 2367
- (2012) H. Liu et al. JOURNAL OF BACTERIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Top 10 plant pathogenic bacteria in molecular plant pathology
- (2012) JOHN MANSFIELD et al. MOLECULAR PLANT PATHOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Pseudomonas syringae pv. actinidiae (PSA) Isolates from Recent Bacterial Canker of Kiwifruit Outbreaks Belong to the Same Genetic Lineage
- (2012) Angelo Mazzaglia et al. PLoS One
- Next-generation genomics of Pseudomonas syringae
- (2011) Heath E. O’Brien et al. CURRENT OPINION IN MICROBIOLOGY
- Emigration of the plant pathogen Pseudomonas syringae from leaf litter contributes to its population dynamics in alpine snowpack
- (2011) Caroline L. Monteil et al. ENVIRONMENTAL MICROBIOLOGY
- Inference of Gain and Loss Events from Phyletic Patterns Using Stochastic Mapping and Maximum Parsimony—A Simulation Study
- (2011) Ofir Cohen et al. Genome Biology and Evolution
- Genome Sequence Analyses of Pseudomonas savastanoi pv. glycinea and Subtractive Hybridization-Based Comparative Genomics with Nine Pseudomonads
- (2011) Mingsheng Qi et al. PLoS One
- ConDeTri - A Content Dependent Read Trimmer for Illumina Data
- (2011) Linnéa Smeds et al. PLoS One
- Pseudomonas syringae pv. actinidiae Draft Genomes Comparison Reveal Strain-Specific Features Involved in Adaptation and Virulence to Actinidia Species
- (2011) Simone Marcelletti et al. PLoS One
- The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity
- (2011) Rongman Cai et al. PLoS Pathogens
- Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates
- (2011) David A. Baltrus et al. PLoS Pathogens
- GLOOME: gain loss mapping engine
- (2010) O. Cohen et al. BIOINFORMATICS
- Pseudomonas syringaeStrains Naturally Lacking the ClassicalP. syringae hrp/hrcLocus Are Common Leaf Colonizers Equipped with an Atypical Type III Secretion System
- (2010) Christopher R. Clarke et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Comparative Genome Analysis Provides Insights into the Evolution and Adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum
- (2010) Sarah Green et al. PLoS One
- Pseudomonas cannabina pv. cannabina pv. nov., and Pseudomonas cannabina pv. alisalensis (Cintas Koike and Bull, 2000) comb. nov., are members of the emended species Pseudomonas cannabina (ex Šutič & Dowson 1959) Gardan, Shafik, Belouin, Brosch, Grimont & Grimont 1999
- (2010) Carolee T. Bull et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- TagDust--a program to eliminate artifacts from next generation sequencing data
- (2009) T. Lassmann et al. BIOINFORMATICS
- A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528
- (2009) David J Studholme et al. BMC GENOMICS
- Endopathogenic lifestyle ofPseudomonas savastanoipv.savastanoiin olive knots
- (2009) Luis Rodríguez-Moreno et al. Microbial Biotechnology
- Expanding the Paradigms of Plant Pathogen Life History and Evolution of Parasitic Fitness beyond Agricultural Boundaries
- (2009) Cindy E. Morris et al. PLoS Pathogens
- Comparing the xylose reductase/xylitol dehydrogenase and xylose isomerase pathways in arabinose and xylose fermenting Saccharomyces cerevisiae strains
- (2008) Maurizio Bettiga et al. Biotechnology for Biofuels
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- Integrating Markov Clustering and Molecular Phylogenetics to Reconstruct the Cyanobacterial Species Tree from Conserved Protein Families
- (2008) W. D. Swingley et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Draft Genome Sequence ofPseudomonas syringaepv.tomatoT1 Reveals a Type III Effector Repertoire Significantly Divergent from That ofPseudomonas syringaepv.tomatoDC3000
- (2008) Nalvo F. Almeida et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- A likelihood framework to analyse phyletic patterns
- (2008) O. Cohen et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Isolation and identification of Pseudomonas syringae pv. aesculi causing bleeding canker of horse chestnut in the UK
- (2008) J. F. Webber et al. PLANT PATHOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started