Incongruence between multi-locus sequence analysis (MLSA) and whole-genome-based phylogenies:Pseudomonas syringaepathovarpisias a cautionary tale

Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut

(2012) Heath E O’Brien et al.   BMC MICROBIOLOGY

Draft Genome Sequence of Pseudomonas syringae Pathovar Syringae Strain FF5, Causal Agent of Stem Tip Dieback Disease on Ornamental Pear

(2012) K. H. Sohn et al.   JOURNAL OF BACTERIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The Molecular Basis of Host Specialization in Bean Pathovars ofPseudomonas syringae

(2012) David A. Baltrus et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Evolution of Plant Pathogenesis inPseudomonas syringae: A Genomics Perspective

(2011) Heath E. O'Brien et al.   Annual Review of Phytopathology

Application of high-throughput genome sequencing to intrapathovar variation in Pseudomonas syringae

(2011) DAVID J. STUDHOLME   MOLECULAR PLANT PATHOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates

(2011) David A. Baltrus et al.   PLoS Pathogens

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS