RUDI, a short interspersed element of the V-SINE superfamily widespread in molluscan genomes

A novel satellite DNA isolated in Pecten jacobaeus shows high sequence similarity among molluscs

(2015) Agnese Petraccioli et al.   MOLECULAR GENETICS AND GENOMICS

The octopus genome and the evolution of cephalopod neural and morphological novelties

(2015) Caroline B. Albertin et al.   NATURE

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Miniature inverted-repeat transposable elements: discovery, distribution, and activity

(2013) Isam Fattash et al.   GENOME

Tandem Repeat-Containing MITEs in the Clam Donax trunculus

(2013) Eva Šatović et al.   Genome Biology and Evolution

Conserved domains and SINE diversity during animal evolution

(2013) Andrea Luchetti et al.   GENOMICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology

(2012) T. Takeuchi et al.   DNA RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

SINEBase: a database and tool for SINE analysis

(2012) Nikita S. Vassetzky et al.   NUCLEIC ACIDS RESEARCH

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A novel Au SINE sequence found in a gymnosperm

(2011) Eiki Yagi et al.   GENES & GENETIC SYSTEMS

Origin and evolution of SINEs in eukaryotic genomes

(2011) D A Kramerov et al.   HEREDITY

Tracking the Ancestry of a Deeply Conserved Eumetazoan SINE Domain

(2011) O. Piskurek et al.   MOLECULAR BIOLOGY AND EVOLUTION

Resolving the evolutionary relationships of molluscs with phylogenomic tools

(2011) Stephen A. Smith et al.   NATURE

Phylogenomics reveals deep molluscan relationships

(2011) Kevin M. Kocot et al.   NATURE

A Molecular Phylogeny of Bivalve Mollusks: Ancient Radiations and Divergences as Revealed by Mitochondrial Genes

(2011) Federico Plazzi et al.   PLoS One

Genomic gems: SINE RNAs regulate mRNA production

(2010) Steven L Ponicsan et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

(2010) Sarah Schaack et al.   TRENDS IN ECOLOGY & EVOLUTION

A GC-rich satellite DNA and karyology of the bivalve mollusk Donax trunculus: a dominance of GC-rich heterochromatin

(2009) V. Petrović et al.   CYTOGENETIC AND GENOME RESEARCH

Characterization of a novel SINE superfamily from invertebrates: “Ceph-SINEs” from the genomes of squids and cuttlefish

(2009) Tetsuya Akasaki et al.   GENE

Long-term conservation vs high sequence divergence: the case of an extraordinarily old satellite DNA in bivalve mollusks

(2009) M Plohl et al.   HEREDITY

InvAluable junk: The cellular impact and function of Alu and B2 RNAs

(2009) Ryan D. Walters et al.   IUBMB LIFE

Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes

(2008) Mika Hirakawa et al.   GENE

Comparative Genomics and Molecular Dynamics of DNA Repeats in Eukaryotes

(2008) G.-F. Richard et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Newly discovered young CORE-SINEs in marsupial genomes

(2007) Maruo Munemasa et al.   GENE