Miniature inverted-repeat transposable elements: discovery, distribution, and activity

MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements

(2013) Guojun Yang   BMC BIOINFORMATICS

A Rice Stowaway MITE for Gene Transfer in Yeast

(2013) Isam Fattash et al.   PLoS One

ATon, abundant novel nonautonomous mobile genetic elements in yellow fever mosquito (Aedes aegypti)

(2012) Guojun Yang et al.   BMC GENOMICS

A Gaijin-like miniature inverted repeat transposable element is mobilized in rice during cell differentiation

(2012) Hai-Tao Dong et al.   BMC GENOMICS

Marker utility of miniature inverted-repeat transposable elements for wheat biodiversity and evolution

(2012) Beery Yaakov et al.   THEORETICAL AND APPLIED GENETICS

A Gene Family Derived from Transposable Elements during Early Angiosperm Evolution Has Reproductive Fitness Benefits in Arabidopsis thaliana

(2012) Zoé Joly-Lopez et al.   PLoS Genetics

Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia

(2012) Shannon HC Eagle et al.   Mobile DNA

Mar, a MITE family of hAT transposons in Drosophila

(2012) Maríndia Deprá et al.   Mobile DNA

Novel transposable elements from Anopheles gambiae

(2011) Rita D Fernández-Medina et al.   BMC GENOMICS

Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes

(2011) Mateusz Janicki et al.   CHROMOSOME RESEARCH

Impact of Small Repeat Sequences on Bacterial Genome Evolution

(2011) Nicholas Delihas   Genome Biology and Evolution

The genome of the leaf-cutting antAcromyrmex echinatiorsuggests key adaptations to advanced social life and fungus farming

(2011) Sanne Nygaard et al.   GENOME RESEARCH

Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies

(2011) L. Guo et al.   JOURNAL OF BACTERIOLOGY

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

(2011) Eman K Al-Dous et al.   NATURE BIOTECHNOLOGY

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

BraSto, a Stowaway MITE from Brassica: recently active copies preferentially accumulate in the gene space

(2011) Véronique Sarilar et al.   PLANT MOLECULAR BIOLOGY

Draft genome of the red harvester ant Pogonomyrmex barbatus

(2011) C. R. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle

(2011) Garret Suen et al.   PLoS Genetics

Retrotransposon-Induced Heterochromatin Spreading in the Mouse Revealed by Insertional Polymorphisms

(2011) Rita Rebollo et al.   PLoS Genetics

TE Displayer for post-genomic analysis of transposable elements

(2010) Rebecca Rooke et al.   BIOINFORMATICS

Burst expansion, distribution and diversification of MITEs in the silkworm genome

(2010) Min-Jin Han et al.   BMC GENOMICS

Miniature Inverted-Repeat Transposable Elements of Stowaway Are Active in Potato

(2010) Masaki Momose et al.   GENETICS

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

A role for host–parasite interactions in the horizontal transfer of transposons across phyla

(2010) Clément Gilbert et al.   NATURE

The genome of a songbird

(2010) Wesley C. Warren et al.   NATURE

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

The genome of Theobroma cacao

(2010) Xavier Argout et al.   NATURE GENETICS

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

TheChlorella variabilisNC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex

(2010) Guillaume Blanc et al.   PLANT CELL

Characterization of a Group of MITEs with Unusual Features from Two Coral Genomes

(2010) Shi Wang et al.   PLoS One

Epigenetic reprogramming during vegetative phase change in maize

(2010) H. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome of the Western Clawed Frog Xenopus tropicalis

(2010) U. Hellsten et al.   SCIENCE

Genomic Comparison of the Ants Camponotus floridanus and Harpegnathos saltator

(2010) R. Bonasio et al.   SCIENCE

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

(2010)   PLOS BIOLOGY

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

High Potential of a Transposon mPing as a Marker System in japonica x japonica Cross in Rice

(2009) Y. Monden et al.   DNA RESEARCH

Population dynamics of miniature inverted-repeat transposable elements (MITEs) in Medicago truncatula

(2009) Dariusz Grzebelus et al.   GENE

MUST: A system for identification of miniature inverted-repeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi

(2009) Yong Chen et al.   GENE

Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs

(2009) E Lerat   HEREDITY

Identification of NbME MITE families: Potential molecular markers in the microsporidia Nosema bombycis

(2009) Jinshan Xu et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

A systematic search and classification of T2 family miniature inverted-repeat transposable elements (MITEs) in Xenopus tropicalis suggests the existence of recently active MITE subfamilies

(2009) Akira Hikosaka et al.   MOLECULAR GENETICS AND GENOMICS

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

(2009) Ken Naito et al.   NATURE

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

The genome of the cucumber, Cucumis sativus L.

(2009) Sanwen Huang et al.   NATURE GENETICS

Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome

(2009) Tatiana Zerjal et al.   PLANT MOLECULAR BIOLOGY

The polychromatic Helitron landscape of the maize genome

(2009) C. Du et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tuned for Transposition: Molecular Determinants Underlying the Hyperactivity of a Stowaway MITE

(2009) G. Yang et al.   SCIENCE

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

(2009) C. M. Wade et al.   SCIENCE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Identification of Sodium Chloride-Regulated Genes in Burkholderia cenocepacia

(2008) Shantanu Bhatt et al.   CURRENT MICROBIOLOGY

Genome Structure of the Legume, Lotus japonicus

(2008) S. Sato et al.   DNA RESEARCH

The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis

(2008) Oliver Piskurek et al.   GENE

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs

(2008) H. Kuang et al.   GENOME RESEARCH

The genome of a lepidopteran model insect, the silkworm Bombyx mori

(2008) The International Silkworm Genome   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Complete Genome Sequence of the Anaerobic, Protein-Degrading Hyperthermophilic Crenarchaeon Desulfurococcus kamchatkensis

(2008) N. V. Ravin et al.   JOURNAL OF BACTERIOLOGY

Genome-Wide Analysis of the Fusarium oxysporum mimp Family of MITEs and Mobilization of Both Native and De Novo Created mimps

(2008) Mara Bergemann et al.   JOURNAL OF MOLECULAR EVOLUTION

Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome

(2008) Maura Lyons et al.   MOLECULAR GENETICS AND GENOMICS

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE

Genome analysis of the platypus reveals unique signatures of evolution

(2008) Wesley C. Warren et al.   NATURE

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

A Transposon, Ping, is Integrated into Intron 4 of the DROOPING LEAF Gene of Rice, Weakly Reducing its Expression and Causing a Mild Drooping Leaf Phenotype

(2008) Yoshihiro Ohmori et al.   PLANT AND CELL PHYSIOLOGY

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

(2008) C. H. Opperman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dual coding of siRNAs and miRNAs by plant transposable elements

(2008) J. Piriyapongsa et al.   RNA

Nezha, a novel active miniature inverted-repeat transposable element in cyanobacteria

(2007) Fengfeng Zhou et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Molecular characterization of the first intact Transib transposon from Helicoverpa zea

(2007) Song Chen et al.   GENE