Population genomic evidence for multiple Pliocene refugia in a montane-restricted harvestman (Arachnida, Opiliones,Sclerobunus robustus) from the southwestern United States

Historical refugia have shaped biogeographical patterns of species richness and phylogenetic diversity in mite harvestmen (Arachnida, Opiliones, Cyphophthalmi) endemic to the Australian Wet Tropics

(2016) Sarah L. Boyer et al.   JOURNAL OF BIOGEOGRAPHY

Imprints of multiple glacial refugia in the Pyrenees revealed by phylogeography and palaeodistribution modelling of an endemic spider

(2016) Leticia Bidegaray-Batista et al.   MOLECULAR ECOLOGY

Glacial refugia, recolonization patterns and diversification forces in Alpine-endemicMegabunusharvestmen

(2016) Gregor A. Wachter et al.   MOLECULAR ECOLOGY

From the mountains to the coast and back again: Ancient biogeography in a radiation of short-range endemic harvestmen from California

(2016) K.N. Emata et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New species in the Sitalcina sura species group (Opiliones, Laniatores, Phalangodidae), with evidence for a biogeographic link between California desert canyons and Arizona sky islands

(2016) Marshal Hedin et al.   ZooKeys

A new monster from southwest Oregon forests: Cryptomaster behemoth sp. n. (Opiliones, Laniatores, Travunioidea)

(2016) James Starrett et al.   ZooKeys

Biogeographic barriers drive co-diversification within associated eukaryotes of theSarracenia alatapitcher plant system

(2016) Jordan D. Satler et al.   PeerJ

Molecular phylogeny, biogeographic history, and evolution of cave-dwelling taxa in the European harvestman genusIschyropsalis(Opiliones: Dyspnoi)

(2015) Axel L. Schönhofer et al.   JOURNAL OF ARACHNOLOGY

Chloroplast phylogeography of Dirca palustris L. indicates populations near the glacial boundary at the Last Glacial Maximum in eastern North America

(2015) Bryan J. Peterson et al.   JOURNAL OF BIOGEOGRAPHY

Sky island diversification meets the multispecies coalescent - divergence in the spruce-fir moss spider (Microhexura montivaga,Araneae, Mygalomorphae) on the highest peaks of southern Appalachia

(2015) Marshal Hedin et al.   MOLECULAR ECOLOGY

Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

(2015) Joseph D. Manthey et al.   MOLECULAR ECOLOGY

Phylogeographic inference using Bayesian model comparison across a fragmented chorus frog species complex

(2015) Lisa N. Barrow et al.   MOLECULAR ECOLOGY

Disentangling the complex evolutionary history of the Western Palearctic blue tits (Cyanistesspp.) - phylogenomic analyses suggest radiation by multiple colonization events and subsequent isolation

(2015) Martin Stervander et al.   MOLECULAR ECOLOGY

The evolution of phylogeographic data sets

(2015) Ryan C. Garrick et al.   MOLECULAR ECOLOGY

Ground-Dwelling Arthropod Communities of a Sky Island Mountain Range in Southeastern Arizona, USA: Obtaining a Baseline for Assessing the Effects of Climate Change

(2015) Wallace M. Meyer et al.   PLoS One

Geometric morphometric and phylogenetic analyses of Arizona Sky Island populations ofScaphinotus petersi Roeschke (Coleoptera: Carabidae)

(2015) Karen A. Ober et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Refugia Persistence of Qinghai-Tibetan Plateau by the Cold-Tolerant Bird Tetraogallus tibetanus (Galliformes: Phasianidae)

(2015) Bei An et al.   PLoS One

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

MICROHABITAT DIFFERENCES IMPACT PHYLOGEOGRAPHIC CONCORDANCE OF CODISTRIBUTED SPECIES: GENOMIC EVIDENCE IN MONTANE SEDGES (CAREXL.) FROM THE ROCKY MOUNTAINS

(2014) Rob Massatti et al.   EVOLUTION

Integrative species delimitation and conservation of tarantulas (Araneae, Mygalomorphae, Theraphosidae) from a North American biodiversity hotspot

(2014) Brent E. Hendrixson et al.   Insect Conservation and Diversity

Genetic consequences of postglacial range expansion in two codistributed rodents (genusDipodomys) depend on ecology and genetic locus

(2014) Tereza Jezkova et al.   MOLECULAR ECOLOGY

Seascape continuity plays an important role in determining patterns of spatial genetic structure in a coral reef fish

(2014) C. C. D'Aloia et al.   MOLECULAR ECOLOGY

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

Integrative Taxonomy and Species Delimitation in Harvestmen: A Revision of the Western North American Genus Sclerobunus (Opiliones: Laniatores: Travunioidea)

(2014) Shahan Derkarabetian et al.   PLoS One

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

EXAMINING THE FULL EFFECTS OF LANDSCAPE HETEROGENEITY ON SPATIAL GENETIC VARIATION: A MULTIPLE MATRIX REGRESSION APPROACH FOR QUANTIFYING GEOGRAPHIC AND ECOLOGICAL ISOLATION

(2013) Ian J. Wang   EVOLUTION

GENETIC ISOLATION BY ENVIRONMENT OR DISTANCE: WHICH PATTERN OF GENE FLOW IS MOST COMMON?

(2013) Jason P. Sexton et al.   EVOLUTION

Model selection as a tool for phylogeographic inference: an example from the willowSalix melanopsis

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

Montane refugia predict population genetic structure in the Large-blotched Ensatina salamander

(2013) Thomas J. Devitt et al.   MOLECULAR ECOLOGY

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

As Old as the Hills: Montane Scorpions in Southwestern North America Reveal Ancient Associations between Biotic Diversification and Landscape History

(2013) Robert W. Bryson et al.   PLoS One

The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History

(2013) Rasmus Heller et al.   PLoS One

Three new species in the harvestmen genus Acuclavella (Opiliones, Dyspnoi, Ischyropsalidoidea), including description of male Acuclavella quattuor Shear, 1986

(2013) Casey Richart et al.   ZooKeys

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Gone with the plate: the opening of the Western Mediterranean basin drove the diversification of ground-dweller spiders

(2012) Leticia Bidegaray-Batista et al.   BMC EVOLUTIONARY BIOLOGY

Quantifying the roles of ecology and geography in spatial genetic divergence

(2012) Ian J. Wang et al.   ECOLOGY LETTERS

Extreme mitochondrial population subdivision in southern Appalachian paleoendemic spiders (Araneae: Hypochilidae: Hypochilus), with implications for species delimitation

(2012) Robin Keith et al.   JOURNAL OF ARACHNOLOGY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny of the harvestmen genus Sabacon (Arachnida: Opiliones: Dyspnoi) reveals multiple Eocene–Oligocene intercontinental dispersal events in the Holarctic

(2012) Axel L. Schönhofer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

(2012) Eva-Maria Willing et al.   PLoS One

Evolution of Scaphinotus petersi (Coleoptera: Carabidae) and the role of climate and geography in the Madrean sky islands of southeastern Arizona, USA

(2012) Sara Gran Mitchell et al.   QUATERNARY RESEARCH

Phylogenetic treatment and taxonomic revision of the trapdoor spider genus Aptostichus Simon (Araneae, Mygalomorphae, Euctenizidae)

(2012) Jason Bond   ZooKeys

Persistence in Peripheral Refugia Promotes Phenotypic Divergence and Speciation in a Rainforest Frog

(2011) Conrad J. Hoskin et al.   AMERICAN NATURALIST

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Niche shifting in response to warming climate after the last glacial maximum: inference from genetic data and niche assessments in the chisel-toothed kangaroo rat (Dipodomys microps)

(2011) Tereza Jezkova et al.   GLOBAL CHANGE BIOLOGY

Protecting the innocent: studying short-range endemic taxa enhances conservation outcomes

(2011) Mark S. Harvey et al.   INVERTEBRATE SYSTEMATICS

Quantifying effects of environmental and geographical factors on patterns of genetic differentiation

(2011) CHENG-RUEI LEE et al.   MOLECULAR ECOLOGY

Integrating statistical genetic and geospatial methods brings new power to phylogeography

(2011) Lauren M. Chan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic diversification without obvious genitalic morphological divergence in harvestmen (Opiliones, Laniatores, Sclerobunus robustus) from montane sky islands of western North America

(2011) Shahan Derkarabetian et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular systematics of sclerosomatid harvestmen (Opiliones, Phalangioidea, Sclerosomatidae): Geography is better than taxonomy in predicting phylogeny

(2011) Marshal Hedin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The evolution and age of populations of Scaphinotus petersi Roeschke on Arizona Sky Islands (Coleoptera, Carabidae, Cychrini)

(2011) Karen Ober et al.   ZooKeys

Dynamic refugia and species persistence: tracking spatial shifts in habitat through time

(2010) Catherine H. Graham et al.   ECOGRAPHY

Habitat continuity and geographic distance predict population genetic differentiation in giant kelp

(2010) Filipe Alberto et al.   ECOLOGY

The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes

(2010) L. Chikhi et al.   GENETICS

Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations

(2010) P. Beerli et al.   GENETICS

Revisiting the Insect Mitochondrial Molecular Clock: The Mid-Aegean Trench Calibration

(2010) A. Papadopoulou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America

(2010) AARON B. A. SHAFER et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Repeated and Time-Correlated Morphological Convergence in Cave-Dwelling Harvestmen (Opiliones, Laniatores) from Montane Western North America

(2010) Shahan Derkarabetian et al.   PLoS One

Population Genetic Differences along a Latitudinal Cline between Original and Recently Colonized Habitat in a Butterfly

(2010) Sofie Vandewoestijne et al.   PLoS One

A multilocus approach to harvestman (Arachnida: Opiliones) phylogeny with emphasis on biogeography and the systematics of Laniatores

(2009) Gonzalo Giribet et al.   CLADISTICS

Welcome back New Zealand: regional biogeography and Gondwanan origin of three endemic genera of mite harvestmen (Arachnida, Opiliones, Cyphophthalmi)

(2009) Sarah L. Boyer et al.   JOURNAL OF BIOGEOGRAPHY

Genetic structure is correlated with phenotypic divergence rather than geographic isolation in the highly polymorphic strawberry poison-dart frog

(2009) IAN J. WANG et al.   MOLECULAR ECOLOGY

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot

(2009) A. C. Carnaval et al.   SCIENCE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Integrating paleoecology and genetics of bird populations in two sky island archipelagos

(2008) John E McCormack et al.   BMC BIOLOGY

Genetic Differentiation among Mountain Island Populations of the Striped Plateau Lizard, Sceloporus virgatus (Squamata: Phrynosomatidae)

(2008) Jacob A. Tennessen et al.   COPEIA

Phylogeography: retrospect and prospect

(2008) John C. Avise   JOURNAL OF BIOGEOGRAPHY

An Integrative Method for Delimiting Cohesion Species: Finding the Population-Species Interface in a Group of Californian Trapdoor Spiders with Extreme Genetic Divergence and Geographic Structuring

(2008) Jason E. Bond et al.   SYSTEMATIC BIOLOGY

Integrating GIS-based environmental data into evolutionary biology

(2008) Kenneth H. Kozak et al.   TRENDS IN ECOLOGY & EVOLUTION

Multigenic phylogeographic divergence in the paleoendemic southern Appalachian opilionid Fumontana deprehendor Shear (Opiliones, Laniatores, Triaenonychidae)

(2007) Steven M. Thomas et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshopprers

(2003) L. Lacey Knowles   MOLECULAR ECOLOGY