Disentangling the complex evolutionary history of the Western Palearctic blue tits (Cyanistesspp.) - phylogenomic analyses suggest radiation by multiple colonization events and subsequent isolation

Islands as model systems in ecology and evolution: prospects fifty years after MacArthur-Wilson

(2015) Ben H. Warren et al.   ECOLOGY LETTERS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Empirical Assessment of RAD Sequencing for Interspecific Phylogeny

(2014) Astrid Cruaud et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci

(2014) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolutionary history of Afrocanarian blue tits inferred from genomewide SNPs

(2014) Jostein Gohli et al.   MOLECULAR ECOLOGY

Pronounced Fixation, Strong Population Differentiation and Complex Population History in the Canary Islands Blue Tit Subspecies Complex

(2014) Bengt Hansson et al.   PLoS One

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

(2014) Huateng Huang et al.   SYSTEMATIC BIOLOGY

Population history, gene flow, and bottlenecks in island populations of a secondary seed disperser, the southern grey shrike (Lanius meridionalis koenigi)

(2014) David P. Padilla et al.   Ecology and Evolution

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolutionary history ofXiphophorusfish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing

(2013) Julia C. Jones et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Return flight to the Canary Islands – The key role of peripheral populations of Afrocanarian blue tits (Aves: Cyanistes teneriffae) in multi-gene reconstructions of colonization pathways

(2013) Martin Päckert et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sampling strategies for species trees: The effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal

(2013) Ammon Corl et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A complete multilocus species phylogeny of the tits and chickadees (Aves: Paridae)

(2013) Ulf S. Johansson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Dynamics of Green Sahara Periods and Their Role in Hominin Evolution

(2013) Juan C. Larrasoaña et al.   PLoS One

Concatenation versus coalescence versus "concatalescence"

(2013) J. Gatesy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Age, origins and extinctions of the avifauna of Macaronesia: a synthesis of phylogenetic and fossil information

(2012) Juan Carlos Illera et al.   QUATERNARY SCIENCE REVIEWS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

HYBRIDIZATION AND BARRIERS TO GENE FLOW IN AN ISLAND BIRD RADIATION

(2011) Ben H. Warren et al.   EVOLUTION

Horizontal and elevational phylogeographic patterns of Himalayan and Southeast Asian forest passerines (Aves: Passeriformes)

(2011) Martin Päckert et al.   JOURNAL OF BIOGEOGRAPHY

A multi-gene approach reveals a complex evolutionary history in the Cyanistes species group

(2011) JUAN CARLOS ILLERA et al.   MOLECULAR ECOLOGY

Rapid parallel evolution of aberrant traits in the diversification of the Gulf of Guinea white-eyes (Aves, Zosteropidae)

(2011) MARTIM MELO et al.   MOLECULAR ECOLOGY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Major global radiation of corvoid birds originated in the proto-Papuan archipelago

(2011) K. A. Jonsson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

A reconstruction of Palaeo-Macaronesia, with particular reference to the long-term biogeography of the Atlantic island laurel forests

(2010) José María Fernández-Palacios et al.   JOURNAL OF BIOGEOGRAPHY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Pliocene forest dynamics as a primary driver of African bird speciation

(2009) Gary Voelker et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Historical biogeography of an Indo-Pacific passerine bird family (Pachycephalidae): different colonization patterns in the Indonesian and Melanesian archipelagos

(2009) Knud A. Jønsson et al.   JOURNAL OF BIOGEOGRAPHY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

New Guinea highland origin of a widespread arthropod supertramp

(2009) M. Balke et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The dynamic evolutionary history of the bananaquit (Coereba flaveola) in the Caribbean revealed by a multigene analysis

(2008) Eva Bellemain et al.   BMC EVOLUTIONARY BIOLOGY

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Are islands the end of the colonization road?

(2008) E BELLEMAIN et al.   TRENDS IN ECOLOGY & EVOLUTION