Identification of RNA-binding Proteins in Macrophages by Interactome Capture

Roquin recognizes a non-canonical hexaloop structure in the 3′-UTR of Ox40

(2016) Robert Janowski et al.   Nature Communications

Translating the Untranslated Region

(2015) Johannes Schwerk et al.   JOURNAL OF IMMUNOLOGY

Hypoxia-induced gene expression results from selective mRNA partitioning to the endoplasmic reticulum

(2015) Jonas J. Staudacher et al.   NUCLEIC ACIDS RESEARCH

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

miR-155 targets Caspase-3 mRNA in activated macrophages

(2015) Rebecca De Santis et al.   RNA Biology

Metabolic Enzymes Enjoying New Partnerships as RNA-Binding Proteins

(2015) Alfredo Castello et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Generation of membrane structures during phagocytosis and chemotaxis of macrophages: role and regulation of the actin cytoskeleton

(2014) Pablo Rougerie et al.   IMMUNOLOGICAL REVIEWS

Rapid Temporal Dynamics of Transcription, Protein Synthesis, and Secretion during Macrophage Activation

(2014) Katrin Eichelbaum et al.   MOLECULAR & CELLULAR PROTEOMICS

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Post-transcriptional coordination of immunological responses by RNA-binding proteins

(2014) Panagiota Kafasla et al.   NATURE IMMUNOLOGY

Structural basis for RNA recognition in roquin-mediated post-transcriptional gene regulation

(2014) Andreas Schlundt et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Characterization of RNA binding and chaperoning activities of HIV-1 Vif protein

(2014) Dona Sleiman et al.   RNA Biology

Translation control of TAK1 mRNA by hnRNP K modulates LPS-induced macrophage activation

(2014) A. Liepelt et al.   RNA

Roquin binding to target mRNAs involves a winged helix-turn-helix motif

(2014) Anja Schuetz et al.   Nature Communications

Novel Mechanism of Attenuation of LPS-Induced NF-κB Activation by the Heat Shock Protein 90 Inhibitor, 17-N-allylamino-17-demethoxygeldanamycin, in Human Lung Microvascular Endothelial Cells

(2013) Gagan S. Thangjam et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Post-transcriptional regulatory networks in immunity

(2013) Pavel Ivanov et al.   IMMUNOLOGICAL REVIEWS

Identification of DEAD-box RNA Helicase 6 (DDX6) as a Cellular Modulator of Vascular Endothelial Growth Factor Expression under Hypoxia

(2013) Sebastian de Vries et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Hsp90 cochaperones p23 and FKBP4 physically interact with hAgo2 and activate RNA interference–mediated silencing in mammalian cells

(2013) Justin M. Pare et al.   MOLECULAR BIOLOGY OF THE CELL

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(2013) Frederic Reynier et al.   MOLECULAR MEDICINE

System-wide identification of RNA-binding proteins by interactome capture

(2013) Alfredo Castello et al.   Nature Protocols

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

The RNA-binding protein repertoire of embryonic stem cells

(2013) S Chul Kwon et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

(2012) Alfredo Castello et al.   CELL

Transcriptional regulation in the innate immune system

(2012) Stephen T Smale   CURRENT OPINION IN IMMUNOLOGY

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

(2012) Alexander G. Baltz et al.   MOLECULAR CELL

Interactions among HCLS1, HAX1 and LEF-1 proteins are essential for G-CSF–triggered granulopoiesis

(2012) Julia Skokowa et al.   NATURE MEDICINE

Global analysis of yeast mRNPs

(2012) Sarah F Mitchell et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Establishment of single-cell screening system for the rapid identification of transcriptional modulators involved in direct cell reprogramming

(2012) Jay W. Shin et al.   NUCLEIC ACIDS RESEARCH

The p38/MK2-Driven Exchange between Tristetraprolin and HuR Regulates AU–Rich Element–Dependent Translation

(2012) Christopher Tiedje et al.   PLoS Genetics

Perspectives on the ARE as it turns 25 years old

(2012) Daniel Beisang et al.   Wiley Interdisciplinary Reviews-RNA

Gene expression profiles of RAW264.7 macrophages stimulated with preparations of LPS differing in isolation and purity

(2011) Holly R Rutledge et al.   Innate Immunity

Myeloid cell expression of the RNA-binding protein HuR protects mice from pathologic inflammation and colorectal carcinogenesis

(2011) Anthie Yiakouvaki et al.   JOURNAL OF CLINICAL INVESTIGATION

The Small Chaperone Protein p23 and Its Cleaved Product p19 in Cellular Stress

(2011) Karen S. Poksay et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

KSRP, many functions for a single protein

(2010) Paola Briata   Frontiers in Bioscience-Landmark

Cortisol is a potent modulator of lipopolysaccharide-induced interferon signaling in macrophages

(2010) Anja M. Billing et al.   Innate Immunity

RNA-Binding Protein AUF1 Regulates Lipopolysaccharide-Induced IL10 Expression by Activating I B Kinase Complex in Monocytes

(2010) S. Sarkar et al.   MOLECULAR AND CELLULAR BIOLOGY

The phosphoproteome of toll-like receptor-activated macrophages

(2010) Gabriele Weintz et al.   Molecular Systems Biology

DDX6 recruits translational silenced human reticulocyte 15-lipoxygenase mRNA to RNP granules

(2010) I. S. Naarmann et al.   RNA

The REM phase of gene regulation

(2010) Matthias W. Hentze et al.   TRENDS IN BIOCHEMICAL SCIENCES

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

mRNA Silencing in Human Erythroid Cell Maturation

(2008) Isabel S. Naarmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH