Hypoxia-induced gene expression results from selective mRNA partitioning to the endoplasmic reticulum

The Unfolded Protein Response Triggers Selective mRNA Release from the Endoplasmic Reticulum

(2014) David W. Reid et al.   CELL

Multifunctional Roles for the Protein Translocation Machinery in RNA Anchoring to the Endoplasmic Reticulum

(2014) Sujatha Jagannathan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

De novo translation initiation on membrane-bound ribosomes as a mechanism for localization of cytosolic protein mRNAs to the endoplasmic reticulum

(2014) Sujatha Jagannathan et al.   RNA

Localization of mRNAs to the endoplasmic reticulum

(2014) Xianying A. Cui et al.   Wiley Interdisciplinary Reviews-RNA

Prolyl 4-hydroxylases, master regulators of the hypoxia response

(2013) J. Myllyharju   Acta Physiologica

Hypoxia-inducible Factor-1α (HIF-1α) Promotes Cap-dependent Translation of Selective mRNAs through Up-regulating Initiation Factor eIF4E1 in Breast Cancer Cells under Hypoxia Conditions

(2013) Tingfang Yi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identification of DEAD-box RNA Helicase 6 (DDX6) as a Cellular Modulator of Vascular Endothelial Growth Factor Expression under Hypoxia

(2013) Sebastian de Vries et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Role of oxygen consumption in hypoxia protection by translation factor depletion

(2013) B. Scott et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Oxygen sensing and hypoxia signalling pathways in animals: the implications of physiology for cancer

(2013) Peter J. Ratcliffe   JOURNAL OF PHYSIOLOGY-LONDON

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

(2013) Jing Wang et al.   NUCLEIC ACIDS RESEARCH

The HILDA Complex Coordinates a Conditional Switch in the 3′-Untranslated Region of the VEGFA mRNA

(2013) Peng Yao et al.   PLOS BIOLOGY

Gene Expression Regulation by Upstream Open Reading Frames and Human Disease

(2013) Cristina Barbosa et al.   PLoS Genetics

Hypoxia-Inducible Factors in Physiology and Medicine

(2012) Gregg L. Semenza   CELL

RNA Binding Protein/RNA Element Interactions and the Control of Translation

(2012) Xavier Pichon et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs

(2012) Yue Yun et al.   GENOME RESEARCH

Endoplasmic reticulum–mitochondria contacts: function of the junction

(2012) Ashley A. Rowland et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Perinuclear Mitochondrial Clustering Creates an Oxidant-Rich Nuclear Domain Required for Hypoxia-Induced Transcription

(2012) A.-B. Al-Mehdi et al.   Science Signaling

Modulating Mitochondrial Intracellular Location as a Redox Signal

(2012) M. P. Murphy   Science Signaling

Eukaryotic Initiation Factor 2 Phosphorylation and Translational Control in Metabolism

(2012) Thomas D. Baird et al.   Advances in Nutrition

p180 Promotes the Ribosome-Independent Localization of a Subset of mRNA to the Endoplasmic Reticulum

(2012) Xianying A. Cui et al.   PLOS BIOLOGY

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

Translational Control via Protein-Regulated Upstream Open Reading Frames

(2011) Jan Medenbach et al.   CELL

Cellular IRES-mediated translation

(2011) Anton A Komar et al.   CELL CYCLE

Primary Role for Endoplasmic Reticulum-bound Ribosomes in Cellular Translation Identified by Ribosome Profiling

(2011) David W. Reid et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Hierarchical regulation of mRNA partitioning between the cytoplasm and the endoplasmic reticulum of mammalian cells

(2011) Qiang Chen et al.   MOLECULAR BIOLOGY OF THE CELL

Deletion of a subgroup of ribosome-related genes minimizes hypoxia-induced changes and confers hypoxia tolerance

(2011) Ajit N. Shah et al.   PHYSIOLOGICAL GENOMICS

Ensembl BioMarts: a hub for data retrieval across taxonomic space

(2011) R. J. Kinsella et al.   Database-The Journal of Biological Databases and Curation

Phorbol-Ester Mediated Suppression of hASH1 Synthesis: Multiple Ways to Keep the Level Down

(2011) Edgar Benko et al.   Frontiers in Molecular Neuroscience

Post-Transcriptional Control of the Hypoxic Response by RNA-Binding Proteins and MicroRNAs

(2011) Myriam Gorospe et al.   Frontiers in Molecular Neuroscience

Translational Regulation of Gene Expression during Conditions of Cell Stress

(2010) Keith A. Spriggs et al.   MOLECULAR CELL

Hypoxia-Inducible Factors and the Response to Hypoxic Stress

(2010) Amar J. Majmundar et al.   MOLECULAR CELL

Discovering causal signaling pathways through gene-expression patterns

(2010) Jignesh R. Parikh et al.   NUCLEIC ACIDS RESEARCH

Addressing mRNAs to the ER: cis sequences act up!

(2010) Judith Kraut-Cohen et al.   TRENDS IN BIOCHEMICAL SCIENCES

The emerging roles of microRNAs in the molecular responses of metabolic rate depression

(2010) K. K. Biggar et al.   Journal of Molecular Cell Biology

Regulation of Translation Initiation in Eukaryotes: Mechanisms and Biological Targets

(2009) Nahum Sonenberg et al.   CELL

Detection of nonneutral substitution rates on mammalian phylogenies

(2009) K. S. Pollard et al.   GENOME RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Intracellular transport by active diffusion

(2009) Clifford P. Brangwynne et al.   TRENDS IN CELL BIOLOGY

Cellular oxygen sensing, signalling and how to survive translational arrest in hypoxia

(2008) M. Fähling   Acta Physiologica

Hypoxia-mediated Selective mRNA Translation by an Internal Ribosome Entry Site-independent Mechanism

(2008) Regina M. Young et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mitochondria and cellular oxygen sensing in the HIF pathway

(2007) Cormac T. Taylor   BIOCHEMICAL JOURNAL

Re-programming of translation following cell stress allows IRES-mediated translation to predominate

(2007) Keith A. Spriggs et al.   BIOLOGY OF THE CELL