Quantitative Analysis of RNA Polymerase Slippages for Production of P3N-PIPO Trans-frame Fusion Proteins in Potyvirids

P3/P3N-PIPO of PVY interacting with BI-1 inhibits the degradation of NIb by ATG6 to facilitate virus replication in N. benthamiana

(2023) Zhen Qing et al.   Frontiers in Plant Science

Proteome expansion in the Potyviridae evolutionary radiation

(2022) Fabio Pasin et al.   FEMS MICROBIOLOGY REVIEWS

ICTV Virus Taxonomy Profile: Potyviridae 2022

(2022) Alice K. Inoue-Nagata et al.   JOURNAL OF GENERAL VIROLOGY

Analysis of proteolytic processing sites in potyvirus polyproteins revealed differential amino acid preferences of NIa-Pro protease in each of seven cleavage sites

(2021) Chul Jun Goh et al.   PLoS One

Comparative study of potyvirid NIa proteases and their cleavage sites

(2021) Sankara Naynar Palani et al.   ARCHIVES OF VIROLOGY

Research Advances in Potyviruses: From the Laboratory Bench to the Field

(2021) Xiuling Yang et al.   Annual Review of Phytopathology

Identification of genome sequences of novel partitiviruses in the quinoa (Chenopodium quinoa) transcriptome datasets

(2021) Dongbin Park et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Integrated Proteomics and Transcriptomics Analyses Reveal the Transcriptional Slippage of a Bymovirus P3N-PIPO Gene Expressed from a PVX Vector in Nicotiana benthamiana

(2021) Chulang Yu et al.   Viruses-Basel

Cell-to-cell movement of plant viruses via plasmodesmata: a current perspective on potyviruses

(2021) Aiming Wang   Current Opinion in Virology

P3N-PIPO Interacts with P3 via the Shared N-Terminal Domain to Recruit Viral Replication Vesicles for Cell-to-Cell Movement

(2020) Mengzhu Chai et al.   JOURNAL OF VIROLOGY

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Plant Negative-Sense RNA Virosphere: Virus Discovery Through New Eyes

(2020) Nicolás Bejerman et al.   Frontiers in Microbiology

The Biological Impact of the Hypervariable N-Terminal Region of Potyviral Genomes

(2019) Hongguang Cui et al.   Annual Review of Virology

Parallelization of MAFFT for large-scale multiple sequence alignments

(2018) Tsukasa Nakamura et al.   BIOINFORMATICS

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencing

(2016) Milton Untiveros et al.   MOLECULAR PLANT PATHOLOGY

Mutational analysis of thePotyviridaetranscriptional slippage site utilized for expression of the P3N-PIPO and P1N-PISPO proteins

(2016) Allan Olspert et al.   NUCLEIC ACIDS RESEARCH

Truncated yet functional viral protein produced via RNA polymerase slippage implies underestimated coding capacity of RNA viruses

(2016) Yuka Hagiwara-Komoda et al.   Scientific Reports

The polymerase slips and PIPO exists

(2015) K. A. White   EMBO REPORTS

Transcriptional slippage in the positive-sense RNA virus family Potyviridae

(2015) A. Olspert et al.   EMBO REPORTS

RNA Polymerase Slippage as a Mechanism for the Production of Frameshift Gene Products in Plant Viruses of the Potyviridae Family

(2015) Bernardo Rodamilans et al.   JOURNAL OF VIROLOGY

Toward better understanding of artifacts in variant calling from high-coverage samples

(2014) Heng Li   BIOINFORMATICS

DEVELOPMENTALLY REGULATED PLASMA MEMBRANE PROTEIN ofNicotiana benthamianaContributes to Potyvirus Movement and Transports to Plasmodesmata via the Early Secretory Pathway and the Actomyosin System

(2014) Chao Geng et al.   PLANT PHYSIOLOGY

Phylogenetic relationships of closely related potyviruses infecting sweet potato determined by genomic characterization of Sweet potato virus G and Sweet potato virus 2

(2012) Fan Li et al.   VIRUS GENES

Interaction of the Trans-Frame Potyvirus Protein P3N-PIPO with Host Protein PCaP1 Facilitates Potyvirus Movement

(2012) Paramasivan Vijayapalani et al.   PLoS Pathogens

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Mutational analysis of the putative pipo of soybean mosaic virus suggests disruption of PIPO protein impedes movement

(2010) R.-H. Wen et al.   VIROLOGY

Formation of Complexes at Plasmodesmata for Potyvirus Intercellular Movement Is Mediated by the Viral Protein P3N-PIPO

(2010) Taiyun Wei et al.   PLoS Pathogens

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

An overlapping essential gene in the Potyviridae

(2008) B. Y.-W. Chung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA