The Plant Negative-Sense RNA Virosphere: Virus Discovery Through New Eyes

Characterisation of a novel Emaravirus identified in mosaic‐diseased Eurasian aspen ( Populus tremula )

(2020) Susanne von Bargen et al.   ANNALS OF APPLIED BIOLOGY

Identification and characterization of cardamom vein clearing virus, a novel aphid-transmitted nucleorhabdovirus

(2020) A. I. Bhat et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Global Organization and Proposed Megataxonomy of the Virus World

(2020) Eugene V. Koonin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

New Technologies for Studying Negative-Strand RNA Viruses in Plant and Arthropod Hosts

(2020) Thomas L. German et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Network Analysis of the Papaya Orchard Virome from Two Agroecological Regions of Chiapas, Mexico

(2020) Ricardo I. Alcalá-Briseño et al.   mSystems

Deep Roots and Splendid Boughs of the Global Plant Virome

(2020) Valerian V. Dolja et al.   Annual Review of Phytopathology

Molecular characterization of a novel cytorhabdovirus with a unique genomic organization infecting yerba mate (Ilex paraguariensis) in Argentina

(2020) Nicolás Bejerman et al.   ARCHIVES OF VIROLOGY

Perilla mosaic virus is a highly divergent emaravirus transmitted by Shevtchenkella sp. (Acari: Eriophyidae)

(2020) Kenji Kubota et al.   PHYTOPATHOLOGY

Identification and characterization of a novel rhabdovirus infecting peach in China

(2020) Jun Zhou et al.   VIRUS RESEARCH

A complex virome including two distinct emaraviruses associated with virus-like symptoms in Camellia japonica

(2020) C. Peracchio et al.   VIRUS RESEARCH

Viromes of Ten Alfalfa Plants in Australia Reveal Diverse Known Viruses and a Novel RNA Virus

(2020) Samira Samarfard et al.   Pathogens

Natural defect of a plant rhabdovirus glycoprotein gene: a case study of virus-plant co-evolution

(2020) Song Zhang et al.   PHYTOPATHOLOGY

Lost and found: Rediscovery and genomic characterization of sowthistle yellow vein virus after a 30+ year hiatus

(2020) Drake C. Stenger et al.   VIRUS RESEARCH

Identification of a novel emaravirus infecting lilac through next-generation sequencing

(2020) Ya-qin WANG et al.   Journal of Integrative Agriculture

Two New Putative Plant Viruses from Wood Metagenomics Analysis of an Esca Diseased Vineyard

(2020) Nadia Bertazzon et al.   Plants-Basel

2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

(2020) Jens H. Kuhn et al.   ARCHIVES OF VIROLOGY

Identification, molecular characterization and prevalence of a novel cytorhabdovirus infecting zucchini crops in Greece

(2020) C.G. Orfanidou et al.   VIRUS RESEARCH

A new emaravirus discovered in Pistacia from Turkey

(2019) Nihal Buzkan et al.   VIRUS RESEARCH

Double-Stranded RNA High-Throughput Sequencing Reveals a New Cytorhabdovirus in a Bean Golden Mosaic Virus-Resistant Common Bean Transgenic Line

(2019) Dione M. T. Alves-Freitas et al.   Viruses-Basel

Diverse and variable virus communities in wild plant populations revealed by metagenomic tools

(2019) Hanna Susi et al.   PeerJ

Tomato Chlorotic Spot Virus (TCSV) Putatively Incorporated a Genomic Segment of Groundnut Ringspot Virus (GRSV) Upon a Reassortment Event

(2019) João Silva et al.   Viruses-Basel

The complete sequences of two divergent variants of the rhabdovirus raspberry vein chlorosis virus and the design of improved primers for virus detection

(2019) Sue Jones et al.   VIRUS RESEARCH

High Throughput Sequencing in Plant Virus Detection and Discovery

(2019) Dan E.V. Villamor et al.   PHYTOPATHOLOGY

Classify viruses — the gain is worth the pain

(2019) Jens H. Kuhn et al.   NATURE

Molecular characterization of Morogoro maize-associated virus, a nucleorhabdovirus detected in maize (Zea mays) in Tanzania

(2019) David Alan Read et al.   ARCHIVES OF VIROLOGY

Novel bird’s-foot trefoil RNA viruses provide insights into a clade of legume-associated enamoviruses and rhabdoviruses

(2019) Humberto J. Debat et al.   ARCHIVES OF VIROLOGY

Complete genome sequence of maize sterile stunt virus

(2019) Ralf G. Dietzgen et al.   ARCHIVES OF VIROLOGY

Determination of the complete genome sequence of European mountain ash ringspot-associated emaravirus from Sorbus intermedia reveals two additional genome segments

(2019) Susanne von Bargen et al.   ARCHIVES OF VIROLOGY

Characterization of Ti ringspot-associated virus, a novel emaravirus associated with an emerging ringspot disease of Cordyline fruticosa (L.)

(2019) Alejandro Olmedo Velarde et al.   PLANT DISEASE

Expanding the RNA Virosphere by Unbiased Metagenomics

(2019) Yong-Zhen Zhang et al.   Annual Review of Virology

A virome from ornamental flowers in an Australian rural town

(2019) S. J. Wylie et al.   ARCHIVES OF VIROLOGY

Molecular and biological properties of two putative new cytorhabdoviruses infecting Trifolium pratense

(2019) J. Fránová et al.   PLANT PATHOLOGY

Sequencing, genome analysis and prevalence of a cytorhabdovirus discovered in Carica papaya

(2019) Andrés X. Medina-Salguero et al.   PLoS One

Discovery of Four Novel Viruses Associated with Flower Yellowing Disease of Green Sichuan Pepper (Zanthoxylum Armatum) by Virome Analysis

(2019) Mengji Cao et al.   Viruses-Basel

Two Novel Negative-Sense RNA Viruses Infecting Grapevine Are Members of a Newly Proposed Genus within the Family Phenuiviridae

(2019) Alfredo Diaz-Lara et al.   Viruses-Basel

Identification and Characterization of a Novel Emaravirus Associated With Jujube (Ziziphus jujuba Mill.) Yellow Mottle Disease

(2019) Caixia Yang et al.   Frontiers in Microbiology

The complete genome sequence of a novel cytorhabdovirus identified in strawberry (Fragaria ananassa Duch.)

(2019) Xinlun Ding et al.   ARCHIVES OF VIROLOGY

The complete genome sequence of apple rootstock virus A, a novel nucleorhabdovirus identified in apple rootstocks

(2019) Dasom Baek et al.   ARCHIVES OF VIROLOGY

Sixty Years After the First Description: Genome Sequence and Biological Characterization of European Wheat Striate Mosaic Virus Infecting Cereal Crops

(2019) Merike Sõmera et al.   PHYTOPATHOLOGY

Molecular and Biological Characterization of a New Strawberry Cytorhabdovirus

(2019) Fránová et al.   Viruses-Basel

Putative new plant viruses associated with Plasmopara viticola ‐infected grapevine samples

(2019) Marco Chiapello et al.   ANNALS OF APPLIED BIOLOGY

Characterization of a New Orthotospovirus from Chilli Pepper in Yunnan Province, China

(2019) Kuanyu Zheng et al.   PLANT DISEASE

Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum

(2019) Yuxin Ma et al.   VIROLOGY

Re-assessing the diversity of negative strand RNA viruses in insects

(2019) Simon Käfer et al.   PLoS Pathogens

Complete genome sequences of two divergent isolates of strawberry crinkle virus coinfecting a single strawberry plant

(2018) Igor Koloniuk et al.   ARCHIVES OF VIROLOGY

Unveiling the complete genome sequence of clerodendrum chlorotic spot virus, a putative dichorhavirus infecting ornamental plants

(2018) Pedro Luis Ramos-González et al.   ARCHIVES OF VIROLOGY

Identification and molecular characterization of a novel varicosa-like virus from red clover

(2018) Igor Koloniuk et al.   ARCHIVES OF VIROLOGY

Using Metagenomics to Characterize an Expanding Virosphere

(2018) Yong-Zhen Zhang et al.   CELL

ICTV Virus Taxonomy Profile: Rhabdoviridae

(2018) Peter J. Walker et al.   JOURNAL OF GENERAL VIROLOGY

First Report of physostegia chlorotic mottle virus on Tomato (Solanum lycopersicum) in Germany

(2018) Y. Z. A. Gaafar et al.   PLANT DISEASE

Comprehensive surveys of Bean common mosaic virus and Bean common mosaic necrosis virus and molecular evidence for occurrence of other Phaseolus vulgaris viruses in Tanzania

(2018) Beatrice Mwaipopo et al.   PLANT DISEASE

Discovery of Negative-Sense RNA Viruses in Trees Infected with Apple Rubbery Wood Disease by Next-Generation Sequencing

(2018) Michael E. Rott et al.   PLANT DISEASE

First Report of an Emaravirus Associated with Witches’ Broom Disease and Eriophyid Mite Infestations of the Blue Palo Verde Tree in Arizona

(2018) M. Ilyas et al.   PLANT DISEASE

Identification and Characterization of Citrus Chlorotic Spot Virus, a New Dichorhavirus Associated with Citrus Leprosis-Like Symptoms

(2018) C. Chabi-Jesus et al.   PLANT DISEASE

Identification and genome analysis of tomato chlorotic spot virus and dsRNA viruses from coinfected vegetables in the Dominican Republic by high-throughput sequencing

(2018) Reina Teresa Martínez et al.   Virology Journal

Identification and Characterization of Wheat Yellow Striate Virus, a Novel Leafhopper-Transmitted Nucleorhabdovirus Infecting Wheat

(2018) Yan Liu et al.   Frontiers in Microbiology

Diversity of three bunya-like viruses infecting apple

(2018) A. A. Wright et al.   ARCHIVES OF VIROLOGY

ICTV Virus Taxonomy Profile: Fimoviridae

(2018) Toufic Elbeaino et al.   JOURNAL OF GENERAL VIROLOGY

The Role of Viruses in the Phytobiome

(2018) James E. Schoelz et al.   Annual Review of Virology

Alstroemeria yellow spot virus (AYSV): a new orthotospovirus species within a growing Eurasian clade

(2018) A. Hassani-Mehraban et al.   ARCHIVES OF VIROLOGY

Characterization of the first tenuivirus naturally infecting dicotyledonous plants

(2018) H. Lecoq et al.   ARCHIVES OF VIROLOGY

Origins and Evolution of the Global RNA Virome

(2018) Yuri I. Wolf et al.   mBio

Plant rhabdoviruses—their origins and vector interactions

(2018) Anna E Whitfield et al.   Current Opinion in Virology

A Negative-Stranded RNA Virus Infecting Citrus Trees: The Second Member of a New Genus Within the Order Bunyavirales

(2018) Beatriz Navarro et al.   Frontiers in Microbiology

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale

(2017) Pauline Bernardo et al.   ISME Journal

ICTV Virus Taxonomy Profile: Ophioviridae

(2017) María Laura García et al.   JOURNAL OF GENERAL VIROLOGY

Diversity, Distribution, and Evolution of Tomato Viruses in China Uncovered by Small RNA Sequencing

(2017) Chenxi Xu et al.   JOURNAL OF VIROLOGY

The first phlebo-like virus infecting plants: a case study on the adaptation of negative-stranded RNA viruses to new hosts

(2017) Beatriz Navarro et al.   MOLECULAR PLANT PATHOLOGY

Virus taxonomy in the age of metagenomics

(2017) Peter Simmonds et al.   NATURE REVIEWS MICROBIOLOGY

Citrus leprosis virus N: A New Dichorhavirus Causing Citrus Leprosis Disease

(2017) Pedro Luis Ramos-González et al.   PHYTOPATHOLOGY

Characterization of the genome of a phylogenetically distinct tospovirus and its interactions with the local lesion-induced host Chenopodium quinoa by whole-transcriptome analyses

(2017) Wan-Chen Chou et al.   PLoS One

A new, widespread emaravirus discovered in blackberry

(2017) Mohamed Hassan et al.   VIRUS RESEARCH

Sequencing viral siRNAs to identify previously undescribed viruses and viroids in a panel of ornamental plant samples structured as a matrix of pools

(2017) Eric Verdin et al.   VIRUS RESEARCH

Two Negative-Strand RNA Viruses Identified in Watermelon Represent a Novel Clade in the Order Bunyavirales

(2017) Min Xin et al.   Frontiers in Microbiology

Next Generation Sequencing for Detection and Discovery of Plant Viruses and Viroids: Comparison of Two Approaches

(2017) Anja Pecman et al.   Frontiers in Microbiology

A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies

(2017) Sebastien Massart et al.   Frontiers in Microbiology

Rice Stripe Mosaic Virus, a Novel Cytorhabdovirus Infecting Rice via Leafhopper Transmission

(2017) Xin Yang et al.   Frontiers in Microbiology

Transcriptome sequencing identifies novel persistent viruses in herbicide resistant wild-grasses

(2017) Federico Sabbadin et al.   Scientific Reports

Analysis of the apple rubbery wood disease by next generation sequencing of total RNA

(2016) V. Jakovljevic et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

A new virus discovered by immunocapture of double-stranded RNA, a rapid method for virus enrichment in metagenomic studies

(2016) Arnaud G. Blouin et al.   Molecular Ecology Resources

Actinidia chlorotic ringspot-associated virus: a novel emaravirus infecting kiwifruit plants

(2016) Yazhou Zheng et al.   MOLECULAR PLANT PATHOLOGY

Isolation and Partial Characterization of a Novel Cytorhabdovirus from Citrus Trees Showing Foliar Symptoms in Iran

(2016) Mohammad Sadegh Sadeghi et al.   PLANT DISEASE

The complete genome of the tospovirus Zucchini lethal chlorosis virus

(2016) R. N. Lima et al.   Virology Journal

Detection by next generation sequencing of a multi-segmented viral genome from sugarcane associated with Ramu stunt disease

(2016) Dimitre Mollov et al.   VIRUS GENES

A novel emaravirus is associated with redbud yellow ringspot disease

(2016) Patrick L. Di Bello et al.   VIRUS RESEARCH

The GenusTospovirus: Emerging Bunyaviruses that Threaten Food Security

(2016) J.E. Oliver et al.   Annual Review of Virology

Identification of Viruses and Viroids by Next-Generation Sequencing and Homology-Dependent and Homology-Independent Algorithms

(2015) Qingfa Wu et al.   Annual Review of Phytopathology

Deep sequencing of dsRNAs recovered from mosaic-diseased pigeonpea reveals the presence of a novel emaravirus: pigeonpea sterility mosaic virus 2

(2015) Toufic Elbeaino et al.   ARCHIVES OF VIROLOGY

Complete genome sequence of Colocasia bobone disease-associated virus, a putative cytorhabdovirus infecting taro

(2015) Colleen M. Higgins et al.   ARCHIVES OF VIROLOGY

Newly identified RNAs of raspberry leaf blotch virus encoding a related group of proteins

(2015) Yuwen Lu et al.   JOURNAL OF GENERAL VIROLOGY

Plant Virus Metagenomics: Advances in Virus Discovery

(2015) Marilyn J. Roossinck et al.   PHYTOPATHOLOGY

Origins and evolution of viruses of eukaryotes: The ultimate modularity

(2015) Eugene V. Koonin et al.   VIROLOGY

Characterization of the complete genome of Barley yellow striate mosaic virus reveals a nested gene encoding a small hydrophobic protein

(2015) Teng Yan et al.   VIROLOGY

Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses

(2015) Nicolás Bejerman et al.   VIROLOGY

Complete genome sequence and intracellular protein localization of Datura yellow vein nucleorhabdovirus

(2015) Ralf G. Dietzgen et al.   VIRUS RESEARCH

The evolution of emaraviruses is becoming more complex: seven segments identified in the causal agent of Rose rosette disease

(2015) Patrick L. Di Bello et al.   VIRUS RESEARCH

Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

(2015) Ci-Xiu Li et al.   eLife

Complete Genome Sequence of Mulberry Vein Banding Associated Virus, a New Tospovirus Infecting Mulberry

(2015) Jiaorong Meng et al.   PLoS One

The complete genome sequence of polygonum ringspot virus

(2014) P. Margaria et al.   ARCHIVES OF VIROLOGY

The complete nucleotide sequence of chrysanthemum stem necrosis virus

(2014) A. M. Dullemans et al.   ARCHIVES OF VIROLOGY

Identification and characterization of Lisianthus necrotic ringspot virus, a novel distinct tospovirus species causing necrotic disease of lisianthus (Eustoma grandiflorum)

(2014) Yoshifumi Shimomoto et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

An Eriophyid Mite-Transmitted Plant Virus Contains Eight Genomic RNA Segments with Unusual Heterogeneity in the Nucleocapsid Protein

(2014) S. Tatineni et al.   JOURNAL OF VIROLOGY

Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

(2014) Peter Skewes-Cox et al.   PLoS One

Characterization of Coffee ringspot virus-Lavras: A model for an emerging threat to coffee production and quality

(2014) T.O. Ramalho et al.   VIROLOGY

A new ophiovirus is associated with blueberry mosaic disease

(2014) Thanuja Thekke-Veetil et al.   VIRUS RESEARCH

Deep sequencing of pigeonpea sterility mosaic virus discloses five RNA segments related to emaraviruses

(2014) Toufic Elbeaino et al.   VIRUS RESEARCH

Genetic characterization of novel putative rhabdovirus and dsRNA virus from Japanese persimmon

(2013) T. Ito et al.   JOURNAL OF GENERAL VIROLOGY

Pepper necrotic spot virus, a new tospovirus infecting solanaceous crops in Peru

(2012) Roger Torres et al.   ARCHIVES OF VIROLOGY

Bioinformatic Analysis of the L polymerase Gene Leads to Discrimination of New Rhabdoviruses

(2012) Karel Petrzik   JOURNAL OF PHYTOPATHOLOGY

Tomato necrotic ringspot virus, a new tospovirus isolated in Thailand

(2010) Channarong Seepiban et al.   ARCHIVES OF VIROLOGY

Soybean blotchy mosaic virus, a New Cytorhabdovirus Found in South Africa

(2010) R. L. Lamprecht et al.   PLANT DISEASE